Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 93.44 | 89.76 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 94.26 | 88.46 |
| Zm00001d038652_P003 | Maize | cytosol | 76.23 | 72.66 |
| OQU78269 | Sorghum | cytosol | 72.13 | 69.84 |
| Bra036335.1-P | Field mustard | cytosol | 58.2 | 60.68 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 59.02 | 60.5 |
| AT5G42980.1 | Thale cress | cytosol | 58.2 | 60.17 |
| CDY53958 | Canola | cytosol | 56.56 | 58.97 |
| AT1G45145.1 | Thale cress | cytosol | 56.56 | 58.47 |
| CDY36029 | Canola | cytosol | 56.56 | 58.47 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 54.1 | 57.89 |
| Bra014037.1-P | Field mustard | cytosol | 55.74 | 57.63 |
| CDY39355 | Canola | cytosol | 55.74 | 57.14 |
| Bra025762.1-P | Field mustard | cytosol | 55.74 | 57.14 |
| CDY29406 | Canola | cytosol | 55.74 | 57.14 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 53.28 | 57.02 |
| AT1G19730.1 | Thale cress | cytosol | 54.1 | 55.46 |
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 54.1 | 55.0 |
| KRH05879 | Soybean | endoplasmic reticulum | 54.1 | 53.66 |
| Solyc04g080850.2.1 | Tomato | extracellular | 54.1 | 53.66 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 49.18 | 53.1 |
| KRH51778 | Soybean | endoplasmic reticulum | 50.82 | 52.99 |
| KRH28739 | Soybean | cytosol | 51.64 | 52.5 |
| KRH61100 | Soybean | cytosol | 50.0 | 52.14 |
| KRH15131 | Soybean | cytosol, nucleus | 50.82 | 52.1 |
| CDY43592 | Canola | cytosol | 52.46 | 52.03 |
| CDY32970 | Canola | cytosol | 52.46 | 52.03 |
| PGSC0003DMT400009623 | Potato | cytosol | 52.46 | 52.03 |
| Bra027469.1-P | Field mustard | cytosol | 52.46 | 52.03 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 47.54 | 50.43 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 45.9 | 49.12 |
| PGSC0003DMT400009306 | Potato | cytosol | 46.72 | 48.31 |
| Solyc02g084710.2.1 | Tomato | extracellular | 46.72 | 48.31 |
| HORVU5Hr1G107210.1 | Barley | cytosol | 44.26 | 41.22 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 51.64 | 39.87 |
| HORVU5Hr1G107170.1 | Barley | cytosol | 44.26 | 37.24 |
| HORVU1Hr1G024700.4 | Barley | cytosol | 40.16 | 33.56 |
| HORVU1Hr1G069550.1 | Barley | cytosol | 35.25 | 32.82 |
| HORVU6Hr1G018190.1 | Barley | mitochondrion | 22.95 | 30.11 |
| HORVU2Hr1G107990.1 | Barley | cytosol | 29.51 | 26.09 |
Protein Annotations
| MapMan:10.6.1 | MapMan:18.7.2 | PDB:2IWT | PDB:2VLT | PDB:2VLU | PDB:2VLV |
| Gene3D:3.40.30.10 | EMBL:AK357069 | EMBL:AY245455 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0006662 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 |
| GO:GO:0019725 | GO:GO:0045454 | GO:GO:0055114 | EnsemblPlantsGene:HORVU1Hr1G075560 | EnsemblPlants:HORVU1Hr1G075560.1 | InterPro:IPR013766 |
| PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 | PFscan:PS51352 | PANTHER:PTHR10438 |
| PANTHER:PTHR10438:SF293 | UniProt:Q7XZK2 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf | InterPro:Thioredoxin_CS |
| InterPro:Thioredoxin_domain | UniParc:UPI00001AAA68 | SEG:seg | : | : | : |
Description
Thioredoxin [Source:UniProtKB/TrEMBL;Acc:Q7XZK2]
Coordinates
chrchr1H:-:511203268..511205595
Molecular Weight (calculated)
13166.0 Da
IEP (calculated)
4.879
GRAVY (calculated)
0.319
Length
122 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASATAAAV AAEVISVHSL EQWTMQIEEA NTAKKLVVID FTASWCGPCR IMAPVFADLA KKFPNAVFLK VDVDELKPIA EQFSVEAMPT FLFMKEGDVK
101: DRVVGAIKEE LTAKVGLHAA AQ
101: DRVVGAIKEE LTAKVGLHAA AQ
001: MAGEGEVIAC HTLEVWNEKV KDANESKKLI VIDFTASWCP PCRFIAPVFA EMAKKFTNVV FFKIDVDELQ AVAQEFKVEA MPTFVFMKEG NIIDRVVGAA
101: KDEINEKLMK HGGLVASA
101: KDEINEKLMK HGGLVASA
Arabidopsis Description
TRX5Thioredoxin H5 [Source:UniProtKB/Swiss-Prot;Acc:Q39241]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.