Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH76717 | Soybean | endoplasmic reticulum, nucleus | 93.33 | 93.33 |
| Bra036839.1-P | Field mustard | cytosol | 72.5 | 76.32 |
| AT3G51030.1 | Thale cress | cytosol | 72.5 | 76.32 |
| CDX77974 | Canola | cytosol | 72.5 | 76.32 |
| CDY34470 | Canola | cytosol | 36.67 | 75.86 |
| Bra012872.1-P | Field mustard | cytosol | 71.67 | 75.44 |
| CDX90669 | Canola | cytosol | 71.67 | 75.44 |
| CDY28996 | Canola | cytosol | 71.67 | 75.44 |
| PGSC0003DMT400009306 | Potato | cytosol | 70.0 | 71.19 |
| VIT_04s0023g02700.t01 | Wine grape | cytosol | 67.5 | 70.43 |
| Solyc02g084710.2.1 | Tomato | extracellular | 68.33 | 69.49 |
| KRH51778 | Soybean | endoplasmic reticulum | 66.67 | 68.38 |
| KRH15131 | Soybean | cytosol, nucleus | 65.83 | 66.39 |
| VIT_18s0001g13250.t01 | Wine grape | cytosol | 61.67 | 64.91 |
| KRH61100 | Soybean | cytosol | 62.5 | 64.1 |
| GSMUA_Achr4P22400_001 | Banana | cytosol, unclear | 60.0 | 63.16 |
| KRH05879 | Soybean | endoplasmic reticulum | 64.17 | 62.6 |
| GSMUA_Achr2P17610_001 | Banana | cytosol | 54.17 | 57.02 |
| HORVU1Hr1G075560.1 | Barley | cytosol | 52.5 | 51.64 |
| TraesCS1D01G327500.1 | Wheat | cytosol, plastid | 50.83 | 51.26 |
| TraesCS1B01G339000.1 | Wheat | cytosol | 50.0 | 50.85 |
| TraesCS1B01G338800.1 | Wheat | cytosol, golgi, plastid, unclear | 52.5 | 49.61 |
| TraesCS1A01G325600.1 | Wheat | cytosol | 52.5 | 48.46 |
| OQU78269 | Sorghum | cytosol | 50.83 | 48.41 |
| TraesCS7A01G562100.1 | Wheat | cytosol | 42.5 | 48.11 |
| Zm00001d038652_P003 | Maize | cytosol | 49.17 | 46.09 |
| KRH01123 | Soybean | cytosol | 45.83 | 44.72 |
| KRG99185 | Soybean | cytosol, plastid | 45.0 | 44.63 |
| KRH45834 | Soybean | cytosol, plastid | 45.0 | 44.63 |
| KRH40137 | Soybean | endoplasmic reticulum | 47.5 | 43.51 |
| KRH01124 | Soybean | endoplasmic reticulum | 47.5 | 42.86 |
| KRH74753 | Soybean | cytosol | 44.17 | 42.74 |
| KRH69384 | Soybean | cytosol | 44.17 | 41.41 |
| KRH74754 | Soybean | cytosol | 43.33 | 41.27 |
| VIT_18s0001g13240.t01 | Wine grape | cytosol | 53.33 | 40.51 |
| KRH40138 | Soybean | cytosol, plastid | 41.67 | 40.0 |
| CDX73752 | Canola | cytosol, mitochondrion | 72.5 | 39.55 |
| KRH69383 | Soybean | cytosol | 41.67 | 39.37 |
| KRH00477 | Soybean | cytosol | 44.17 | 38.13 |
| TraesCS7D01G001000.1 | Wheat | cytosol | 34.17 | 36.28 |
| KRH09556 | Soybean | cytosol | 40.83 | 35.77 |
| KRH40136 | Soybean | endoplasmic reticulum | 46.67 | 35.67 |
| KRH69387 | Soybean | plastid | 40.83 | 35.51 |
| KRH74748 | Soybean | plastid | 40.83 | 35.51 |
| KRH22228 | Soybean | cytosol | 35.0 | 34.43 |
| KRH10686 | Soybean | cytosol | 34.17 | 33.06 |
| KRH21649 | Soybean | cytosol, plastid | 34.17 | 32.8 |
| KRH27111 | Soybean | nucleus | 34.17 | 32.54 |
| KRH25890 | Soybean | nucleus | 33.33 | 31.75 |
| KRH01119 | Soybean | cytosol | 36.67 | 31.43 |
| KRH64869 | Soybean | cytosol | 40.0 | 31.37 |
| KRH40706 | Soybean | mitochondrion | 42.5 | 30.18 |
| KRH55615 | Soybean | cytosol | 30.0 | 28.57 |
| KRH33304 | Soybean | cytosol | 29.17 | 27.78 |
| KRH00940 | Soybean | nucleus, plastid | 35.83 | 24.02 |
| KRH40285 | Soybean | plastid | 35.83 | 23.76 |
Protein Annotations
| MapMan:10.6.1 | EntrezGene:100499701 | MapMan:18.7.2 | Gene3D:3.40.30.10 | EMBL:ACUP02006762 | EMBL:BT089218 |
| UniProt:C6SVM5 | EnsemblPlantsGene:GLYMA_11G073000 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004791 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006662 | GO:GO:0006950 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0015035 | GO:GO:0016671 | GO:GO:0019725 | GO:GO:0034599 |
| GO:GO:0045454 | GO:GO:0047134 | GO:GO:0055114 | GO:GO:0098869 | InterPro:IPR013766 | EnsemblPlants:KRH28739 |
| ProteinID:KRH28739 | ProteinID:KRH28739.1 | PFAM:PF00085 | PIRSF:PIRSF000077 | PRINTS:PR00421 | ScanProsite:PS00194 |
| PFscan:PS51352 | PANTHER:PTHR10438 | PANTHER:PTHR10438:SF370 | SUPFAM:SSF52833 | InterPro:Thioredoxin | InterPro:Thioredoxin-like_sf |
| InterPro:Thioredoxin_CS | InterPro:Thioredoxin_domain | UniParc:UPI0001B15760 | : | : | : |
Description
hypothetical protein
Coordinates
chr11:+:5447829..5450315
Molecular Weight (calculated)
13160.8 Da
IEP (calculated)
5.154
GRAVY (calculated)
0.044
Length
120 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGSSEEGQV ISCHTVDAWN DQLQKGNQSK KLIVVDFTAS WCGPCRFIAP FLAELAKKFT SVVFLKVDVD ELKSVSQDWA IEAMPTFVFV KEGTLLSKVV
101: GAKKDELQQT IEKYVASASA
101: GAKKDELQQT IEKYVASASA
001: MASEEGQVIA CHTVETWNEQ LQKANESKTL VVVDFTASWC GPCRFIAPFF ADLAKKLPNV LFLKVDTDEL KSVASDWAIQ AMPTFMFLKE GKILDKVVGA
101: KKDELQSTIA KHLA
101: KKDELQSTIA KHLA
Arabidopsis Description
TRX1Thioredoxin H1 [Source:UniProtKB/Swiss-Prot;Acc:P29448]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.