CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04597
KRH28456
KRH39571
KRH57934
KRH63322
KRH74377
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	KRH04597	AT2G23420.1	21798944
AT1G09630.1	KRH28456	AT2G23420.1	21798944
AT1G09630.1	KRH57934	AT2G23420.1	21798944
AT1G09630.1	KRH63322	AT2G23420.1	21798944
AT1G09630.1	KRH77015	AT2G23420.1	21798944
AT1G09630.1	KRH39571	AT4G17720.1	21798944
AT1G09630.1	KRH74377	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26288	Soybean	endoplasmic reticulum	94.91	94.47
Bra020006.1-P	Field mustard	cytosol	89.35	88.94
CDY50888	Canola	cytosol	89.35	88.94
AT1G09630.1	Thale cress	cytosol	89.35	88.94
VIT_12s0035g01140.t01	Wine grape	extracellular	88.43	88.84
CDX93495	Canola	cytosol	88.89	88.48
Solyc10g045550.1.1	Tomato	nucleus	86.11	86.51
GSMUA_Achr6P28910_001	Banana	cytosol	83.8	83.41
GSMUA_Achr2P05630_001	Banana	cytosol	82.41	82.79
GSMUA_Achr6P18430_001	Banana	cytosol	81.48	78.22
Os05t0105100-01	Rice	golgi, plasma membrane	78.7	77.27
OQU77196	Sorghum	cytosol	78.7	77.27
HORVU1Hr1G001920.2	Barley	cytosol	78.7	75.56
KRH15036	Soybean	cytosol, nucleus	75.46	75.46
TraesCS1B01G018900.1	Wheat	cytosol	77.31	74.89
TraesCS1D01G013300.1	Wheat	cytosol	76.85	74.44
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	74.54	74.19
TraesCS1A01G015400.1	Wheat	cytosol	76.39	73.99
KRH29738	Soybean	endoplasmic reticulum	73.61	73.61
KRH24729	Soybean	endoplasmic reticulum, nucleus	73.61	73.61
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	75.93	73.54
EER98344	Sorghum	cytosol	75.46	73.09
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	73.15	72.81
TraesCS5B01G530800.1	Wheat	cytosol	75.0	72.65
Os03t0843100-01	Rice	cytosol	75.0	72.65
PGSC0003DMT400045950	Potato	cytosol	85.65	72.55
TraesCS4A01G343500.1	Wheat	cytosol	75.0	72.0
TraesCS5D01G529500.1	Wheat	cytosol	74.54	71.56
KRH20359	Soybean	cytosol, endoplasmic reticulum	68.52	68.2
KRH27364	Soybean	endoplasmic reticulum	68.06	67.74
KRH55839	Soybean	endoplasmic reticulum	68.06	67.74
KRH50137	Soybean	cytosol, mitochondrion	68.06	67.74
KRH25681	Soybean	cytosol	67.59	67.28
KRH30863	Soybean	cytosol	67.13	66.82
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.13	66.82
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	67.13	66.82
KRH22259	Soybean	cytosol, nucleus	66.67	66.06
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	66.2	65.6
KRH22324	Soybean	cytosol, endoplasmic reticulum	63.89	63.3
KRH27001	Soybean	cytosol, endoplasmic reticulum	63.43	62.84
Zm00001d034802_P001	Maize	cytosol	66.67	61.54
Zm00001d034803_P001	Maize	cytosol	65.74	60.68
EER90540	Sorghum	cytosol	65.28	59.75
KRH31313	Soybean	endoplasmic reticulum	60.19	58.3
KRH59301	Soybean	cytosol, endoplasmic reticulum	61.57	58.08
KRG97554	Soybean	cytosol, endoplasmic reticulum	59.72	57.85
KRH75359	Soybean	endoplasmic reticulum	58.8	56.95
KRH33003	Soybean	cytosol	59.26	56.89
KRH71891	Soybean	cytosol	57.87	56.05
KRG88929	Soybean	cytosol	57.87	56.05
KRH43151	Soybean	cytosol, endoplasmic reticulum	59.72	54.43
KRH68938	Soybean	cytosol	58.33	53.39
KRG97215	Soybean	cytosol	57.87	52.97
HORVU5Hr1G120210.4	Barley	plastid	75.46	51.58
KRH27503	Soybean	cytosol	54.17	51.32
KRH36458	Soybean	cytosol	52.78	50.0
KRH47850	Soybean	cytosol	56.48	49.8
KRH06418	Soybean	cytosol	56.02	49.59

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02009815	EnsemblPlantsGene:GLYMA_16G001800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1MJU0	EnsemblPlants:KRH06049
ProteinID:KRH06049	ProteinID:KRH06049.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00023D7669	:

Description

hypothetical protein

Coordinates

chr16:-:100663..102059

Molecular Weight (calculated)

23850.3 Da

IEP (calculated)

7.341

GRAVY (calculated)

-0.290

Length

216 amino acids

Sequence
(BLAST)

001: MARRAEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADANIVI MLIGNKTDLK HLRAVATEDA QGYSEKEGLS FIETSALEAT NVEKAFQTIL AEIYRIISKK SLSSNEPASA NIKEGMTITV
201: GGPQSNASKP SCCTSS

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.