Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020006.1-P | Field mustard | cytosol | 99.54 | 99.54 |
| CDX93495 | Canola | cytosol | 99.08 | 99.08 |
| AT1G09630.1 | Thale cress | cytosol | 96.77 | 96.77 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 89.4 | 90.23 |
| KRH06049 | Soybean | endoplasmic reticulum | 88.94 | 89.35 |
| KRH26288 | Soybean | endoplasmic reticulum | 88.48 | 88.48 |
| Solyc10g045550.1.1 | Tomato | nucleus | 86.64 | 87.44 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 85.25 | 86.05 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 85.71 | 85.71 |
| OQU77196 | Sorghum | cytosol | 80.18 | 79.09 |
| Os05t0105100-01 | Rice | golgi, plasma membrane | 79.72 | 78.64 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 80.65 | 77.78 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 80.65 | 77.78 |
| CDY09919 | Canola | cytosol | 75.58 | 76.64 |
| CDY06256 | Canola | cytosol | 75.58 | 76.64 |
| TraesCS1B01G018900.1 | Wheat | cytosol | 77.88 | 75.78 |
| TraesCS1D01G013300.1 | Wheat | cytosol | 77.88 | 75.78 |
| CDY06703 | Canola | cytosol | 75.12 | 75.46 |
| Os03t0843100-01 | Rice | cytosol | 77.42 | 75.34 |
| TraesCS1A01G015400.1 | Wheat | cytosol | 76.96 | 74.89 |
| CDY71720 | Canola | cytosol | 74.65 | 74.65 |
| Zm00001d005495_P001 | Maize | extracellular, mitochondrion, plasma membrane | 76.04 | 73.99 |
| EER98344 | Sorghum | cytosol | 75.58 | 73.54 |
| PGSC0003DMT400045950 | Potato | cytosol | 86.18 | 73.33 |
| CDY33014 | Canola | cytosol | 73.27 | 73.27 |
| CDY02867 | Canola | cytosol | 72.35 | 72.35 |
| CDY32661 | Canola | cytosol | 72.35 | 72.35 |
| TraesCS5B01G530800.1 | Wheat | cytosol | 74.19 | 72.2 |
| TraesCS4A01G343500.1 | Wheat | cytosol | 74.19 | 71.56 |
| TraesCS5D01G529500.1 | Wheat | cytosol | 73.73 | 71.11 |
| CDY35128 | Canola | cytosol | 69.59 | 69.91 |
| CDX75804 | Canola | cytosol | 69.59 | 69.27 |
| CDY40023 | Canola | cytosol | 68.66 | 68.98 |
| CDX82451 | Canola | cytosol | 69.12 | 68.81 |
| CDX96799 | Canola | cytosol | 68.2 | 68.52 |
| CDY20100 | Canola | cytosol | 68.66 | 68.35 |
| CDX90160 | Canola | cytosol | 67.28 | 67.91 |
| CDY64916 | Canola | cytosol | 66.82 | 67.44 |
| CDY62557 | Canola | cytosol | 66.82 | 67.44 |
| CDY35757 | Canola | cytosol | 67.28 | 66.97 |
| CDY15659 | Canola | cytosol | 67.28 | 66.97 |
| CDX99430 | Canola | cytosol | 65.9 | 66.82 |
| CDX94631 | Canola | cytosol | 66.82 | 66.51 |
| CDY34094 | Canola | cytosol | 66.36 | 66.06 |
| CDY30818 | Canola | cytosol | 66.36 | 66.06 |
| CDX87774 | Canola | cytosol | 64.52 | 64.81 |
| CDX79548 | Canola | cytosol | 58.06 | 63.96 |
| CDY55638 | Canola | cytosol | 63.59 | 63.59 |
| CDY01540 | Canola | cytosol | 63.59 | 63.59 |
| CDY06210 | Canola | cytosol | 64.98 | 63.23 |
| CDY09976 | Canola | cytosol | 64.98 | 63.23 |
| CDX76522 | Canola | cytosol | 62.67 | 62.67 |
| CDX86101 | Canola | cytosol | 73.73 | 62.5 |
| Zm00001d034802_P001 | Maize | cytosol | 67.28 | 62.39 |
| CDX80299 | Canola | cytosol | 73.73 | 62.02 |
| Zm00001d034803_P001 | Maize | cytosol | 66.82 | 61.97 |
| EER90540 | Sorghum | cytosol | 65.9 | 60.59 |
| CDY00758 | Canola | cytosol | 61.29 | 60.18 |
| CDX73833 | Canola | cytosol | 61.29 | 60.18 |
| CDY42133 | Canola | cytosol | 60.37 | 59.01 |
| CDY50568 | Canola | cytosol | 60.37 | 59.01 |
| CDY08447 | Canola | cytosol | 60.37 | 59.01 |
| CDY52622 | Canola | cytosol | 60.37 | 59.01 |
| CDY69836 | Canola | cytosol | 60.37 | 58.48 |
| CDX86332 | Canola | cytosol | 59.91 | 58.3 |
| CDY54519 | Canola | cytosol | 59.45 | 57.85 |
| CDY60884 | Canola | cytosol | 59.45 | 57.85 |
| CDX69843 | Canola | cytosol | 57.6 | 56.05 |
| CDX96994 | Canola | cytosol | 57.6 | 56.05 |
| CDX99094 | Canola | cytosol | 73.73 | 55.75 |
| CDY18682 | Canola | cytosol | 57.6 | 55.56 |
| CDX81274 | Canola | cytosol | 57.6 | 55.07 |
| CDX81790 | Canola | plastid | 67.74 | 55.06 |
| HORVU5Hr1G120210.4 | Barley | plastid | 74.19 | 50.95 |
| CDX90017 | Canola | cytosol | 54.84 | 50.21 |
| CDY15192 | Canola | cytosol | 54.84 | 50.21 |
| CDX69367 | Canola | cytosol | 40.09 | 47.28 |
| CDX69369 | Canola | cytosol | 60.37 | 32.11 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:A0A078IP83 | UniProt:A0A078IP83 | EnsemblPlants:CDY50888 | ProteinID:CDY50888 |
| ProteinID:CDY50888.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00097721001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF613 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0004EE3799 |
| SEG:seg | : | : | : | : | : |
Description
BnaCnng19800DBnaCnng19800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IP83]
Coordinates
chrLK032946:+:9644..11101
Molecular Weight (calculated)
24122.5 Da
IEP (calculated)
6.542
GRAVY (calculated)
-0.349
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRPEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEIYRIISKK SISSDQANAN ANVKEGQTID
201: VAASSESNTK KPCCSSS
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEIYRIISKK SISSDQANAN ANVKEGQTID
201: VAASSESNTK KPCCSSS
001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
Arabidopsis Description
RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.