Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER98344 | Sorghum | cytosol | 96.41 | 96.41 |
| Solyc01g103380.2.1 | Tomato | nucleus | 73.99 | 77.1 |
| PGSC0003DMT400064102 | Potato | cytosol | 73.99 | 77.1 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 73.54 | 76.28 |
| CDY50888 | Canola | cytosol | 73.99 | 76.04 |
| KRH06049 | Soybean | endoplasmic reticulum | 73.54 | 75.93 |
| Bra020006.1-P | Field mustard | cytosol | 73.54 | 75.58 |
| CDX93495 | Canola | cytosol | 73.54 | 75.58 |
| AT1G09630.1 | Thale cress | cytosol | 73.09 | 75.12 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 72.65 | 74.65 |
| KRH26288 | Soybean | endoplasmic reticulum | 72.2 | 74.19 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 71.3 | 73.95 |
| Solyc10g045550.1.1 | Tomato | nucleus | 71.3 | 73.95 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 74.44 | 73.78 |
| Zm00001d034675_P002 | Maize | cytosol | 68.61 | 71.16 |
| Zm00001d034803_P001 | Maize | cytosol | 70.4 | 67.09 |
| Zm00001d034802_P001 | Maize | cytosol | 69.96 | 66.67 |
| Zm00001d046313_P001 | Maize | plastid | 64.57 | 66.36 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 64.13 | 66.2 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 63.68 | 65.74 |
| Zm00001d043935_P001 | Maize | cytosol | 62.78 | 63.64 |
| PGSC0003DMT400045950 | Potato | cytosol | 72.2 | 63.14 |
| Zm00001d048222_P001 | Maize | extracellular, plasma membrane | 57.85 | 59.45 |
| Zm00001d014278_P001 | Maize | extracellular, plasma membrane | 57.85 | 59.45 |
| Zm00001d028002_P001 | Maize | mitochondrion | 57.4 | 58.99 |
| Zm00001d005504_P001 | Maize | cytosol, extracellular | 59.64 | 58.85 |
| Zm00001d037004_P002 | Maize | cytosol | 64.57 | 50.17 |
| Zm00001d021246_P002 | Maize | cytosol | 51.57 | 46.37 |
Protein Annotations
| EntrezGene:100193335 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | UniProt:B4FEN1 | EMBL:BT035569 | EMBL:EU968014 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | ProteinID:ONM21317.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF564 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00017B6790 | EnsemblPlantsGene:Zm00001d005495 |
| EnsemblPlants:Zm00001d005495_P001 | EnsemblPlants:Zm00001d005495_T001 | SEG:seg | : | : | : |
Description
Ras-related protein RABA2a
Coordinates
chr2:-:175967213..175970912
Molecular Weight (calculated)
24575.1 Da
IEP (calculated)
7.502
GRAVY (calculated)
-0.184
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRPASWEQ GGDEYDYLFK VVLIGDSGVG KSNLLSRFTK NTFALDSKST IGVEFATRTL QVENKIIKAQ IWDTAGQERY RAITSAYYRG AVGALLVYDV
101: TKVMTFENVK RWLKELRDHA DSNIVVMLIG NKTDLRHLRS VAVEDAASFA ESEGLFFIET SALDATNVEK AFHTVLAEIY RIISKKPLSS EESGLGSGNL
201: REGQSIQVSA TNSGALTSRC CSS
101: TKVMTFENVK RWLKELRDHA DSNIVVMLIG NKTDLRHLRS VAVEDAASFA ESEGLFFIET SALDATNVEK AFHTVLAEIY RIISKKPLSS EESGLGSGNL
201: REGQSIQVSA TNSGALTSRC CSS
001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
Arabidopsis Description
RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.