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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 1
  • vacuole 1
  • cytosol 3
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:cytosol
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH04597
KRH28456
KRH39571
KRH57934
KRH63322
KRH74377
KRH77015

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G09630.1 KRH04597 AT2G23420.1 21798944
AT1G09630.1 KRH28456 AT2G23420.1 21798944
AT1G09630.1 KRH57934 AT2G23420.1 21798944
AT1G09630.1 KRH63322 AT2G23420.1 21798944
AT1G09630.1 KRH77015 AT2G23420.1 21798944
AT1G09630.1 KRH39571 AT4G17720.1 21798944
AT1G09630.1 KRH74377 AT4G17720.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH06049 Soybean endoplasmic reticulum 94.47 94.91
VIT_12s0035g01140.t01 Wine grape extracellular 88.94 89.77
Bra020006.1-P Field mustard cytosol 88.48 88.48
CDY50888 Canola cytosol 88.48 88.48
CDX93495 Canola cytosol 88.02 88.02
AT1G09630.1 Thale cress cytosol 87.56 87.56
Solyc10g045550.1.1 Tomato nucleus 86.64 87.44
GSMUA_Achr6P28910_001 Banana cytosol 85.25 85.25
GSMUA_Achr2P05630_001 Banana cytosol 82.95 83.72
GSMUA_Achr6P18430_001 Banana cytosol 81.11 78.22
Os05t0105100-01 Rice golgi, plasma membrane 79.26 78.18
OQU77196 Sorghum cytosol 79.26 78.18
HORVU1Hr1G001920.2 Barley cytosol 79.72 76.89
TraesCS1B01G018900.1 Wheat cytosol 78.34 76.23
TraesCS1D01G013300.1 Wheat cytosol 77.88 75.78
TraesCS1A01G015400.1 Wheat cytosol 77.42 75.34
KRH15036 Soybean cytosol, nucleus 74.19 74.54
KRH73103 Soybean cytosol, endoplasmic reticulum, nucleus 73.73 73.73
KRH24729 Soybean endoplasmic reticulum, nucleus 73.27 73.61
KRH29738 Soybean endoplasmic reticulum 73.27 73.61
PGSC0003DMT400045950 Potato cytosol 86.18 73.33
KRG97821 Soybean cytosol, endoplasmic reticulum, nucleus 72.81 72.81
TraesCS5B01G530800.1 Wheat cytosol 74.65 72.65
Zm00001d005495_P001 Maize extracellular, mitochondrion, plasma membrane 74.19 72.2
Os03t0843100-01 Rice cytosol 74.19 72.2
TraesCS4A01G343500.1 Wheat cytosol 74.65 72.0
TraesCS5D01G529500.1 Wheat cytosol 74.65 72.0
EER98344 Sorghum cytosol 73.73 71.75
KRH20359 Soybean cytosol, endoplasmic reticulum 69.12 69.12
KRH27364 Soybean endoplasmic reticulum 68.66 68.66
KRH55839 Soybean endoplasmic reticulum 68.66 68.66
KRH50137 Soybean cytosol, mitochondrion 68.66 68.66
KRH25681 Soybean cytosol 68.2 68.2
KRH30863 Soybean cytosol 67.74 67.74
KRH21946 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 67.74 67.74
KRH32712 Soybean cytosol, endoplasmic reticulum, mitochondrion 67.28 67.28
KRH22259 Soybean cytosol, nucleus 66.82 66.51
KRH27074 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 66.36 66.06
KRH22324 Soybean cytosol, endoplasmic reticulum 64.52 64.22
KRH27001 Soybean cytosol, endoplasmic reticulum 64.06 63.76
Zm00001d034802_P001 Maize cytosol 67.74 62.82
Zm00001d034803_P001 Maize cytosol 67.28 62.39
EER90540 Sorghum cytosol 66.36 61.02
KRH31313 Soybean endoplasmic reticulum 60.37 58.74
KRG97554 Soybean cytosol, endoplasmic reticulum 60.37 58.74
KRH59301 Soybean cytosol, endoplasmic reticulum 61.75 58.52
KRH75359 Soybean endoplasmic reticulum 59.45 57.85
KRH33003 Soybean cytosol 59.91 57.78
KRH71891 Soybean cytosol 58.53 56.95
KRG88929 Soybean cytosol 58.53 56.95
KRH43151 Soybean cytosol, endoplasmic reticulum 60.37 55.27
KRH68938 Soybean cytosol 58.53 53.81
KRG97215 Soybean cytosol 58.06 53.39
KRH27503 Soybean cytosol 55.3 52.63
HORVU5Hr1G120210.4 Barley plastid 75.12 51.58
KRH36458 Soybean cytosol 53.92 51.32
KRH47850 Soybean cytosol 56.68 50.2
KRH06418 Soybean cytosol 56.22 50.0
Protein Annotations
EntrezGene:100797258MapMan:22.8.1.1Gene3D:3.40.50.300EMBL:ACUP02007703EMBL:BT097804UniProt:C6TJF9
EnsemblPlantsGene:GLYMA_12G165400GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488
GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005768
GO:GO:0016787EnsemblPlants:KRH26288ProteinID:KRH26288ProteinID:KRH26288.1InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF613SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231
UniParc:UPI0001B1667F:::::
Description
hypothetical protein
Coordinates
chr12:-:31954604..31956399
Molecular Weight (calculated)
23968.4 Da
IEP (calculated)
6.540
GRAVY (calculated)
-0.297
Length
217 amino acids
Sequence
(BLAST)
001: MARRAEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADANIVI MLIGNKTDLK HLRAVATEDA QGYAEKEGLS FIETSALEAT NVENAFQTIL AEIYRIISKK SLSSNDPAAN IIKEGKTITV
201: GGAPEPNTNK PSCCTSS
Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)
001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
Arabidopsis Description
RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.