CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 4
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15036	Soybean	cytosol, nucleus	97.23	97.69
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	89.86	89.86
KRH29738	Soybean	endoplasmic reticulum	87.1	87.5
KRH24729	Soybean	endoplasmic reticulum, nucleus	87.1	87.5
Solyc03g079900.2.1	Tomato	cytosol	84.79	85.58
PGSC0003DMT400055848	Potato	cytosol	84.33	85.51
PGSC0003DMT400069776	Potato	cytosol	84.33	85.12
Solyc05g052900.2.1	Tomato	cytosol	83.41	84.19
Os03t0823700-01	Rice	plasma membrane	82.95	83.72
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	82.49	83.26
Zm00001d034675_P002	Maize	cytosol	82.03	82.79
KXG37238	Sorghum	cytosol	82.03	82.79
GSMUA_Achr6P14930_001	Banana	cytosol	64.98	82.46
GSMUA_Achr7P26890_001	Banana	cytosol	70.97	82.35
GSMUA_Achr9P03770_001	Banana	cytosol	70.97	82.35
TraesCS5D01G498600.1	Wheat	cytosol	80.65	81.4
TraesCS5B01G498600.1	Wheat	cytosol, plastid	80.65	81.4
TraesCS5A01G485100.1	Wheat	cytosol, golgi	80.65	81.4
GSMUA_Achr8P02230_001	Banana	plasma membrane	80.65	81.02
GSMUA_Achr5P28770_001	Banana	cytosol	79.72	79.72
VIT_13s0019g02470.t01	Wine grape	cytosol	88.02	79.25
KRH06049	Soybean	endoplasmic reticulum	74.19	74.54
KRH26288	Soybean	endoplasmic reticulum	73.73	73.73
KRH50137	Soybean	cytosol, mitochondrion	67.74	67.74
KRH22259	Soybean	cytosol, nucleus	67.74	67.43
KRH20359	Soybean	cytosol, endoplasmic reticulum	67.28	67.28
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	67.28	66.97
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	66.82	66.82
KRH25681	Soybean	cytosol	65.9	65.9
KRH27364	Soybean	endoplasmic reticulum	65.9	65.9
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	65.44	65.44
KRH30863	Soybean	cytosol	65.44	65.44
KRH55839	Soybean	endoplasmic reticulum	65.44	65.44
KRH22324	Soybean	cytosol, endoplasmic reticulum	61.75	61.47
KRH27001	Soybean	cytosol, endoplasmic reticulum	61.75	61.47
KRH31313	Soybean	endoplasmic reticulum	62.21	60.54
KRG97554	Soybean	cytosol, endoplasmic reticulum	62.21	60.54
KRH59301	Soybean	cytosol, endoplasmic reticulum	62.67	59.39
KRH33003	Soybean	cytosol	59.91	57.78
KRH75359	Soybean	endoplasmic reticulum	58.99	57.4
KRH43151	Soybean	cytosol, endoplasmic reticulum	62.21	56.96
KRH71891	Soybean	cytosol	58.53	56.95
KRG88929	Soybean	cytosol	58.06	56.5
KRH27503	Soybean	cytosol	56.22	53.51
KRH36458	Soybean	cytosol	55.3	52.63
KRG97215	Soybean	cytosol	56.22	51.69
KRH68938	Soybean	cytosol	56.22	51.69
KRH47850	Soybean	cytosol	58.06	51.43
KRH06418	Soybean	cytosol	57.6	51.23

Protein Annotations

EntrezGene:100813743	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02001265	EnsemblPlantsGene:GLYMA_02G252000	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1JI35	EnsemblPlants:KRH73103	ProteinID:KRH73103	ProteinID:KRH73103.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002336C06	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:43916904..43919538

Molecular Weight (calculated)

24024.4 Da

IEP (calculated)

6.934

GRAVY (calculated)

-0.253

Length

217 amino acids

Sequence
(BLAST)

001: MAFKVDHEYD YLFKVVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVQRWLREL RDHADSNIVI MMAGNKSDLN HLRAVSTEDA QSLAEREGLS FLETSALEAY NVDKAFQTIL FDIYHIISKK ALAAQEATSS TGLPQGTTIN
201: VSNMAGNAGG NRSCCSN

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.