Factsheet for GSMUA_Achr6P14930_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P03770_001	Banana	cytosol	84.8	77.54
GSMUA_Achr7P26890_001	Banana	cytosol	81.29	74.33
Os03t0823700-01	Rice	plasma membrane	88.3	70.23
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	88.3	70.23
KXG37238	Sorghum	cytosol	87.72	69.77
TraesCS5D01G498600.1	Wheat	cytosol	86.55	68.84
TraesCS5B01G498600.1	Wheat	cytosol, plastid	86.55	68.84
TraesCS5A01G485100.1	Wheat	cytosol, golgi	86.55	68.84
GSMUA_Achr8P27780_001	Banana	cytosol	71.93	68.33
Zm00001d034675_P002	Maize	cytosol	85.38	67.91
PGSC0003DMT400055848	Potato	cytosol	83.63	66.82
GSMUA_Achr8P02230_001	Banana	plasma membrane	83.63	66.2
Solyc03g079900.2.1	Tomato	cytosol	83.04	66.05
PGSC0003DMT400069776	Potato	cytosol	83.04	66.05
GSMUA_Achr5P28770_001	Banana	cytosol	83.04	65.44
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	83.04	65.44
Solyc05g052900.2.1	Tomato	cytosol	81.87	65.12
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	82.46	64.98
KRH15036	Soybean	cytosol, nucleus	81.29	64.35
VIT_13s0019g02470.t01	Wine grape	cytosol	83.63	59.34
GSMUA_Achr2P05630_001	Banana	cytosol	71.93	57.21
GSMUA_Achr3P15680_001	Banana	plasma membrane	71.93	56.68
GSMUA_Achr5P09130_001	Banana	cytosol	69.59	54.84
GSMUA_Achr6P28910_001	Banana	cytosol	69.59	54.84
GSMUA_Achr3P15540_001	Banana	cytosol	68.42	54.17
GSMUA_Achr9P05610_001	Banana	cytosol	67.84	53.95
GSMUA_Achr1P16540_001	Banana	cytosol	61.99	52.74
GSMUA_Achr6P18430_001	Banana	cytosol	69.01	52.44
GSMUA_Achr8P27180_001	Banana	cytosol	65.5	51.85
GSMUA_Achr4P02540_001	Banana	cytosol	57.89	51.56
GSMUA_Achr1P11940_001	Banana	cytosol	64.91	51.39
GSMUA_Achr4P02760_001	Banana	cytosol	54.39	48.95
GSMUA_Achr6P31790_001	Banana	cytosol	46.78	48.19
GSMUA_Achr1P04780_001	Banana	cytosol	54.39	46.5
GSMUA_Achr7P14790_001	Banana	cytosol	52.05	46.35
GSMUA_Achr3P11810_001	Banana	cytosol	60.82	46.22
GSMUA_Achr3P01690_001	Banana	cytosol	58.48	45.66
GSMUA_Achr1P19620_001	Banana	cytosol	61.4	45.45
GSMUA_Achr8P18090_001	Banana	cytosol	57.31	44.95
GSMUA_Achr3P21290_001	Banana	cytosol	57.31	44.75
GSMUA_Achr3P13850_001	Banana	cytosol	57.31	41.88
GSMUA_Achr9P00860_001	Banana	cytosol	50.88	37.83
GSMUA_Achr7P10970_001	Banana	cytosol	53.22	35.97

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G14930_001	EnsemblPlants:GSMUA_Achr6P14930_001	EnsemblPlants:GSMUA_Achr6T14930_001
UniProt:M0T741	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029500B1	:	:	:

Description

Ras-related protein Rab11C [Source:GMGC_GENE;Acc:GSMUA_Achr6G14930_001]

Coordinates

chr6:-:9921676..9923867

Molecular Weight (calculated)

18845.4 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.134

Length

171 amino acids

Sequence
(BLAST)

001: MAYRVDNEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQIEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQTF
101: ENEELSFMET SALEALNIDK AFQTILTDIY NIISRKALAA QEAAGTVPSQ GMTINVSDSA GGFAKRGCCS S

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.