Factsheet for GSMUA_Achr9P00860_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P10010_001
GSMUA_Achr4P18690_001
GSMUA_Achr5P07440_001
GSMUA_Achr5P14320_001
GSMUA_Achr7P22310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	GSMUA_Achr10P...	AT2G38360.1	21798944
AT1G01200.1	GSMUA_Achr3P10010_001	AT2G38360.1	21798944
AT1G01200.1	GSMUA_Achr4P18690_001	AT2G38360.1	21798944
AT1G01200.1	GSMUA_Achr5P07440_001	AT2G38360.1	21798944
AT1G01200.1	GSMUA_Achr5P14320_001	AT2G38360.1	21798944
AT1G01200.1	GSMUA_Achr7P22310_001	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P13850_001	Banana	cytosol	81.74	80.34
TraesCS7B01G287900.1	Wheat	cytosol	68.26	70.09
TraesCS7D01G381500.1	Wheat	cytosol	66.96	68.75
Os06t0714600-01	Rice	cytosol	66.52	68.0
EER90389	Sorghum	cytosol	60.87	66.99
Os09t0527600-01	Rice	cytosol, plasma membrane	69.13	66.53
KRH06418	Soybean	cytosol	70.43	66.39
KRH47850	Soybean	cytosol	70.43	66.12
VIT_15s0048g03000.t01	Wine grape	cytosol	68.7	66.11
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	63.04	65.61
PGSC0003DMT400000356	Potato	cytosol	68.7	65.56
AT1G01200.1	Thale cress	cytosol	67.39	65.4
KRG97215	Soybean	cytosol	66.96	65.25
KRH68938	Soybean	cytosol	66.96	65.25
Bra033277.1-P	Field mustard	cytosol	65.65	63.71
CDX90017	Canola	cytosol	65.65	63.71
HORVU7Hr1G091490.3	Barley	cytosol	63.04	63.6
Solyc01g096220.2.1	Tomato	plastid	66.96	63.37
CDY15192	Canola	cytosol	65.22	63.29
TraesCS5D01G321800.1	Wheat	cytosol	66.52	62.45
TraesCS5B01G316300.1	Wheat	cytosol	66.96	62.1
EER97073	Sorghum	cytosol	68.7	61.72
Zm00001d021246_P002	Maize	cytosol	66.09	61.29
TraesCS5A01G315700.1	Wheat	cytosol	65.22	60.73
GSMUA_Achr3P11810_001	Banana	cytosol	56.96	58.22
GSMUA_Achr1P16540_001	Banana	cytosol	50.0	57.21
GSMUA_Achr8P18090_001	Banana	cytosol	53.91	56.88
GSMUA_Achr3P01690_001	Banana	cytosol	53.91	56.62
GSMUA_Achr5P09130_001	Banana	cytosol	53.04	56.22
GSMUA_Achr1P19620_001	Banana	cytosol	56.09	55.84
GSMUA_Achr3P21290_001	Banana	cytosol	53.04	55.71
GSMUA_Achr1P11940_001	Banana	cytosol	51.74	55.09
GSMUA_Achr6P28910_001	Banana	cytosol	51.3	54.38
GSMUA_Achr4P02760_001	Banana	cytosol	44.78	54.21
GSMUA_Achr2P05630_001	Banana	cytosol	50.43	53.95
GSMUA_Achr9P03770_001	Banana	cytosol	43.48	53.48
GSMUA_Achr7P26890_001	Banana	cytosol	43.48	53.48
GSMUA_Achr3P15540_001	Banana	cytosol	50.0	53.24
GSMUA_Achr3P15680_001	Banana	plasma membrane	50.0	53.0
GSMUA_Achr9P05610_001	Banana	cytosol	49.13	52.56
GSMUA_Achr6P18430_001	Banana	cytosol	51.3	52.44
GSMUA_Achr8P02230_001	Banana	plasma membrane	49.13	52.31
GSMUA_Achr8P27180_001	Banana	cytosol	48.7	51.85
GSMUA_Achr5P28770_001	Banana	cytosol	48.7	51.61
GSMUA_Achr1P04780_001	Banana	cytosol	44.78	51.5
GSMUA_Achr8P27780_001	Banana	cytosol	40.0	51.11
GSMUA_Achr4P02540_001	Banana	cytosol	42.61	51.04
GSMUA_Achr6P14930_001	Banana	cytosol	37.83	50.88
GSMUA_Achr6P31790_001	Banana	cytosol	36.52	50.6
GSMUA_Achr7P14790_001	Banana	cytosol	41.74	50.0
GSMUA_Achr7P10970_001	Banana	cytosol	42.61	38.74

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr9G00860_001	EnsemblPlants:GSMUA_Achr9P00860_001
EnsemblPlants:GSMUA_Achr9T00860_001	UniProt:M0TWE3	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295AF50	:

Description

Ras-related protein Rab11A [Source:GMGC_GENE;Acc:GSMUA_Achr9G00860_001]

Coordinates

chr9:-:631807..632747

Molecular Weight (calculated)

25608.3 Da

IEP (calculated)

4.952

GRAVY (calculated)

-0.264

Length

230 amino acids

Sequence
(BLAST)

001: MEDEWGAERA AEIDYVFKVV VIGDSAVGKT QLLSRFTKDE FCFDSKSTIG IEFQTRTIVL NRKRIKAQIW DTAGQERYRA VTSAYYRGAL GAMLVYDITK
101: RPTFDHVARW VEELRANADK AIVIMLIGNK SDLAEKRAVS TEDAVEFAEE QGLFFSEASA LSGDNVESAF LRLIEEIHGV VSRKDLESDE GSRDGGNDVL
201: RLKGNKVSVL SEVSMMETSA LRKGTRCACS

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.