CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03822
EES15518
KXG22202
KXG38626
OQU79263
OQU82692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	EES03822	AT2G38360.1	21798944
AT1G01200.1	EES15518	AT2G38360.1	21798944
AT1G01200.1	KXG22202	AT2G38360.1	21798944
AT1G01200.1	KXG38626	AT2G38360.1	21798944
AT1G01200.1	OQU79263	AT2G38360.1	21798944
AT1G01200.1	OQU82692	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G287900.1	Wheat	cytosol	75.6	70.54
TraesCS7D01G381500.1	Wheat	cytosol	74.64	69.64
Os06t0714600-01	Rice	cytosol	74.16	68.89
HORVU7Hr1G091490.3	Barley	cytosol	70.81	64.91
GSMUA_Achr3P13850_001	Banana	cytosol	68.42	61.11
GSMUA_Achr9P00860_001	Banana	cytosol	66.99	60.87
EER97073	Sorghum	cytosol	67.94	55.47
KRH06418	Soybean	cytosol	62.68	53.69
KRH47850	Soybean	cytosol	62.2	53.06
PGSC0003DMT400000356	Potato	cytosol	60.29	52.28
AT1G01200.1	Thale cress	cytosol	58.85	51.9
VIT_15s0048g03000.t01	Wine grape	cytosol	59.33	51.88
Solyc01g096220.2.1	Tomato	plastid	60.29	51.85
KRH68938	Soybean	cytosol	58.37	51.69
KRG97215	Soybean	cytosol	57.89	51.27
EER92725	Sorghum	cytosol	52.63	50.69
Bra033277.1-P	Field mustard	cytosol	57.42	50.63
CDX90017	Canola	cytosol	57.42	50.63
CDY15192	Canola	cytosol	57.42	50.63
OQU91938	Sorghum	cytosol	52.15	50.23
EER96479	Sorghum	cytosol	54.07	50.0
KXG37238	Sorghum	cytosol	48.33	46.98
EER89913	Sorghum	cytosol	47.85	46.08
OQU87300	Sorghum	cytosol	47.85	45.66
EER98344	Sorghum	cytosol	48.33	45.29
EES19950	Sorghum	cytosol	46.41	44.91
OQU89311	Sorghum	cytosol	46.41	44.91
EES19812	Sorghum	cytosol	46.89	44.55
EES17935	Sorghum	cytosol	45.93	44.24
OQU77196	Sorghum	cytosol	45.93	43.64
EER90540	Sorghum	cytosol	47.85	42.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:C5Z1U8	EnsemblPlants:EER90389	ProteinID:EER90389	ProteinID:EER90389.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3010G265400
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A8986B	RefSeq:XP_002439022.1

Description

hypothetical protein

Coordinates

chr10:-:60115041..60115675

Molecular Weight (calculated)

23144.6 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.130

Length

209 amino acids

Sequence
(BLAST)

001: MEEDYVFKIV VIGDSAVGKT QLLGRFTRDE FFLDSKSTIG IEFQTRTVDI ARHRVKAQIW DTAGARTYYR GALGAMLVYD VTSRHAARWV TELRAHADKS
101: IVVMLVGNKA DLAGAVRWRQ TRRPLFAEEQ GLFFSEASAL SGDNVERAFL TLLQEIHANV SRKRLEAAPD EDTGAADVLA LKGTKLSLAD EISIMETSAL
201: RRASSCSCT

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.