Factsheet for Solyc01g096220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g076360.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	Solyc10g076360.1.1	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400000356	Potato	cytosol	93.83	94.61
KRH68938	Soybean	cytosol	74.07	76.27
KRG97215	Soybean	cytosol	73.66	75.85
KRH06418	Soybean	cytosol	75.31	75.0
KRH47850	Soybean	cytosol	75.31	74.69
VIT_15s0048g03000.t01	Wine grape	cytosol	72.43	73.64
AT1G01200.1	Thale cress	cytosol	69.96	71.73
CDY15192	Canola	cytosol	67.9	69.62
CDX90017	Canola	cytosol	67.9	69.62
Bra033277.1-P	Field mustard	cytosol	67.9	69.62
GSMUA_Achr9P00860_001	Banana	cytosol	63.37	66.96
Solyc04g012180.2.1	Tomato	cytosol, unclear	60.49	66.22
Solyc11g010100.1.1	Tomato	cytosol	60.91	66.07
GSMUA_Achr3P13850_001	Banana	cytosol	61.32	63.68
Os06t0714600-01	Rice	cytosol	58.44	63.11
TraesCS7B01G287900.1	Wheat	cytosol	58.02	62.95
Os09t0527600-01	Rice	cytosol, plasma membrane	61.32	62.34
Solyc01g086850.2.1	Tomato	cytosol	57.61	62.22
TraesCS7D01G381500.1	Wheat	cytosol	57.2	62.05
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	56.38	61.99
Solyc03g064020.2.1	Tomato	cytosol	55.97	60.71
Solyc10g079030.1.1	Tomato	plastid	56.38	60.62
EER90389	Sorghum	cytosol	51.85	60.29
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	53.09	59.45
TraesCS5D01G321800.1	Wheat	cytosol	59.67	59.18
Solyc05g052900.2.1	Tomato	cytosol	51.85	58.6
TraesCS5B01G316300.1	Wheat	cytosol	59.67	58.47
TraesCS5A01G315700.1	Wheat	cytosol	59.26	58.3
Solyc03g079900.2.1	Tomato	cytosol	51.44	58.14
Solyc01g103380.2.1	Tomato	nucleus	51.03	57.94
Zm00001d021246_P002	Maize	cytosol	58.85	57.66
Solyc07g053480.2.1	Tomato	cytosol, plastid	51.44	57.6
HORVU7Hr1G091490.3	Barley	cytosol	53.91	57.46
Solyc10g008840.2.1	Tomato	cytosol	50.62	57.21
Solyc10g045550.1.1	Tomato	nucleus	50.62	57.21
Solyc12g014080.1.1	Tomato	cytosol	51.03	57.14
Solyc06g005810.2.1	Tomato	cytosol, unclear	50.62	56.94
Solyc02g072180.2.1	Tomato	cytosol	50.62	56.68
Solyc06g076450.2.1	Tomato	plastid	49.79	56.28
EER97073	Sorghum	cytosol	59.26	56.25
Solyc03g006270.2.1	Tomato	cytosol	49.79	56.02
Solyc07g055290.2.1	Tomato	plastid	48.15	53.67

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:K4B010	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF345	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc01g096220.2
EnsemblPlants:Solyc01g096220.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002767897	:	:	:

Description

Ras-related protein RABA3 [Source:Projected from Arabidopsis thaliana (AT1G01200) UniProtKB/Swiss-Prot;Acc:Q9LNK1]

Coordinates

chr1:+:87314716..87316882

Molecular Weight (calculated)

27105.3 Da

IEP (calculated)

6.365

GRAVY (calculated)

-0.199

Length

243 amino acids

Sequence
(BLAST)

001: MNQEMSGFED QMKRVNGVHH NEDKIDYVFK VVVIGDSAVG KTQVLSRFAK NEFCFDSKST IGVEFQTRTV SMQSKVVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMLVYDI TKRQTFDHVA RWVEELRAHA DSSIVIMLIG NKADLVDSRA VPTEDAVEFA ERQGLFFSET SALSGHNVES AFFKLLQEIF DMVSRKTLLV
201: PSGANGNYIK ETSNGLLKGL KIDVISGPDF EVSEMKKLSS CSC

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.