Factsheet for Solyc06g076450.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
extracellular: 29876421

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078200	Potato	cytosol	97.67	97.67
Solyc06g005810.2.1	Tomato	cytosol, unclear	91.16	90.74
KRH29738	Soybean	endoplasmic reticulum	89.3	88.89
KRH24729	Soybean	endoplasmic reticulum, nucleus	88.84	88.43
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	87.91	87.1
Bra018190.1-P	Field mustard	cytosol	87.44	86.64
AT1G07410.1	Thale cress	cytosol	85.58	85.98
AT3G46830.1	Thale cress	cytosol	86.05	85.25
AT5G59150.1	Thale cress	cytosol	85.58	84.79
CDY33014	Canola	cytosol	85.12	84.33
CDY06703	Canola	cytosol	84.65	84.26
Solyc03g079900.2.1	Tomato	cytosol	84.19	84.19
CDY06256	Canola	cytosol	83.72	84.11
CDY09919	Canola	cytosol	83.72	84.11
Bra002589.1-P	Field mustard	cytosol	84.65	83.87
Bra015578.1-P	Field mustard	cytosol	84.19	83.8
Solyc05g052900.2.1	Tomato	cytosol	83.72	83.72
Bra020334.1-P	Field mustard	cytosol	84.19	83.41
CDY32661	Canola	cytosol	84.19	83.41
CDY02867	Canola	cytosol	84.19	83.41
CDY71720	Canola	cytosol	83.72	82.95
CDX86101	Canola	cytosol	87.44	73.44
Solyc01g103380.2.1	Tomato	nucleus	72.09	72.43
CDX80299	Canola	cytosol	85.58	71.32
Solyc10g045550.1.1	Tomato	nucleus	70.7	70.7
Solyc07g053480.2.1	Tomato	cytosol, plastid	71.16	70.51
Bra031573.1-P	Field mustard	cytosol	82.33	69.14
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	68.37	67.74
Solyc07g055290.2.1	Tomato	plastid	67.91	66.97
Solyc12g014080.1.1	Tomato	cytosol	66.98	66.36
Solyc10g008840.2.1	Tomato	cytosol	66.05	66.05
CDX99094	Canola	cytosol	87.44	65.51
Solyc03g006270.2.1	Tomato	cytosol	65.58	65.28
Solyc02g072180.2.1	Tomato	cytosol	64.65	64.06
Solyc04g012180.2.1	Tomato	cytosol, unclear	61.4	59.46
Solyc11g010100.1.1	Tomato	cytosol	61.4	58.93
Solyc10g079030.1.1	Tomato	plastid	60.93	57.96
Solyc03g064020.2.1	Tomato	cytosol	60.0	57.59
Solyc01g086850.2.1	Tomato	cytosol	59.53	56.89
Solyc01g096220.2.1	Tomato	plastid	56.28	49.79

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:K4CA05	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc06g076450.2	EnsemblPlants:Solyc06g076450.2.1	TIGRFAMs:TIGR00231	UniParc:UPI000276711B	:	:

Description

No Description!

Coordinates

chr6:-:47498298..47500384

Molecular Weight (calculated)

23823.2 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.244

Length

215 amino acids

Sequence
(BLAST)

001: MANKMDHEYD YLFKIVVIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI IMAGNKSDLR HLRAVSEQDG QALAEKEGLS FLETSALEAF NVDKAFHTIL TDIYQIISKK ALAAQEADST ALPGQGTTIN
201: VSDTSANVKR GCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.