Factsheet for Bra018190.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT3G46830.1	Thale cress	cytosol	96.31	96.31
Bra002589.1-P	Field mustard	cytosol	92.63	92.63
Bra020334.1-P	Field mustard	cytosol	90.78	90.78
Solyc06g005810.2.1	Tomato	cytosol, unclear	88.94	89.35
PGSC0003DMT400053686	Potato	cytosol	88.94	89.35
KRH29738	Soybean	endoplasmic reticulum	88.02	88.43
Bra015578.1-P	Field mustard	cytosol	87.56	87.96
KRH24729	Soybean	endoplasmic reticulum, nucleus	87.56	87.96
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	87.56	87.56
Solyc06g076450.2.1	Tomato	plastid	86.64	87.44
PGSC0003DMT400078200	Potato	cytosol	86.64	87.44
CDX86101	Canola	cytosol	100.0	84.77
CDX99094	Canola	cytosol	100.0	75.61
Bra020006.1-P	Field mustard	cytosol	73.73	73.73
Bra031573.1-P	Field mustard	cytosol	85.71	72.66
Bra026016.1-P	Field mustard	cytosol	67.28	67.59
Bra001581.1-P	Field mustard	cytosol	66.82	66.51
Bra021589.1-P	Field mustard	cytosol	65.44	65.14
Bra010860.1-P	Field mustard	cytosol	64.52	65.12
Bra030105.1-P	Field mustard	cytosol	64.52	64.22
Bra032914.1-P	Field mustard	cytosol	64.06	63.76
Bra032424.1-P	Field mustard	cytosol	64.98	63.23
Bra012597.1-P	Field mustard	cytosol	63.13	63.13
Bra022959.1-P	Field mustard	cytosol	63.13	62.84
Bra021009.1-P	Field mustard	cytosol	62.67	62.67
Bra001439.1-P	Field mustard	cytosol	60.37	59.28
Bra037516.1-P	Field mustard	cytosol	60.37	58.74
Bra038701.1-P	Field mustard	cytosol	59.91	58.56
Bra009040.1-P	Field mustard	cytosol	59.45	57.85
Bra037810.1-P	Field mustard	cytosol	59.45	57.33
Bra011818.1-P	Field mustard	cytosol	58.53	56.95
Bra034771.1-P	Field mustard	cytosol	59.91	49.43
Bra033277.1-P	Field mustard	cytosol	51.61	47.26

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra018190	EnsemblPlants:Bra018190.1	EnsemblPlants:Bra018190.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886
GO:GO:0009504	GO:GO:0009506	GO:GO:0016020	GO:GO:0016787	UniProt:M4DNV2	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253F4E9	SEG:seg	:	:

Description

AT3G46830 (E=6e-109) ATRAB11A, ATRABA2C, ATRAB-A2C, RAB-A2C | ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C); GTP binding

Coordinates

chrA06:+:10924180..10925344

Molecular Weight (calculated)

23833.1 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.289

Length

217 amino acids

Sequence
(BLAST)

001: MANRVDQEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTTQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNALRWLREL RDHADSNIVI MMAGNKSDLN HLRSVAEEDG HNLAEKEGLS FLETSALEAT NVEKAFQTIL GEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVDDTSGGV KRGCCST

Best Arabidopsis Sequence Match ( AT3G46830.2 )
(BLAST)

001: MTHRVDQEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTTQVEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVAEEDG QSLAEKEGLS FLETSALEAT NVEKAFQTIL GEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVDDTSGGA KRACCSS

Arabidopsis Description

RABA2CRas-related protein RABA2c [Source:UniProtKB/Swiss-Prot;Acc:Q96283]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.