Factsheet for Bra034771.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08447	Canola	cytosol	84.41	100.0
CDY42133	Canola	cytosol	84.41	100.0
Bra038701.1-P	Field mustard	cytosol	82.51	97.75
Bra001439.1-P	Field mustard	cytosol	81.37	96.83
KRH33003	Soybean	cytosol	74.52	87.11
VIT_08s0007g07800.t01	Wine grape	cytosol	72.62	85.65
KRH71891	Soybean	cytosol	71.48	84.3
Solyc10g079030.1.1	Tomato	plastid	70.34	81.86
PGSC0003DMT400033664	Potato	cytosol	69.2	81.25
Solyc03g064020.2.1	Tomato	cytosol	68.82	80.8
PGSC0003DMT400021064	Potato	cytosol	69.2	80.53
Bra037516.1-P	Field mustard	cytosol	66.54	78.48
Bra009040.1-P	Field mustard	cytosol	56.65	66.82
Bra037810.1-P	Field mustard	cytosol	56.65	66.22
Bra011818.1-P	Field mustard	cytosol	55.51	65.47
Bra010860.1-P	Field mustard	cytosol	49.81	60.93
Bra002589.1-P	Field mustard	cytosol	50.19	60.83
Bra020006.1-P	Field mustard	cytosol	49.81	60.37
Bra020334.1-P	Field mustard	cytosol	49.43	59.91
Bra018190.1-P	Field mustard	cytosol	49.43	59.91
Bra030105.1-P	Field mustard	cytosol	49.43	59.63
Bra032914.1-P	Field mustard	cytosol	49.43	59.63
Bra015578.1-P	Field mustard	cytosol	48.67	59.26
Bra001581.1-P	Field mustard	cytosol	49.05	59.17
Bra021009.1-P	Field mustard	cytosol	48.67	58.99
Bra021589.1-P	Field mustard	cytosol	48.67	58.72
Bra026016.1-P	Field mustard	cytosol	47.91	58.33
Bra012597.1-P	Field mustard	cytosol	47.91	58.06
Bra022959.1-P	Field mustard	cytosol	47.15	56.88
Bra032424.1-P	Field mustard	cytosol	47.53	56.05
Bra033277.1-P	Field mustard	cytosol	49.05	54.43
Bra031573.1-P	Field mustard	cytosol	48.67	50.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra034771	EnsemblPlants:Bra034771.1	EnsemblPlants:Bra034771.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4F126	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002547477	SEG:seg

Description

AT3G12160 (E=4e-117) ATRABA4D, RABA4D | RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding

Coordinates

chrA05:+:21339002..21340325

Molecular Weight (calculated)

29706.5 Da

IEP (calculated)

6.295

GRAVY (calculated)

-0.248

Length

263 amino acids

Sequence
(BLAST)

001: MHGRFGCLRA QYESETLRVD LFEERRSLLG FVIWNIIYVY QMSNLQGDYN QKIDYVFKVV LIGDSAVGKT QLLARFARNE FSVDSKATIG VEFQTKTLVI
101: DNKTVKAQIW DTAGQERYRA VTSAYYRGAV GAMLVYDMTK RQSFDHMAKW LEELRGHADK NIVIMLIGNK CDLGSLRAVP TEDAQEFAQR ENLFFMETSA
201: LEATNVETAF LTILTEIYRI ISKKTLTADD DDADGNSSLL KGTRIIIPSE QETGKRGGCC GKS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.