Factsheet for VIT_08s0007g07800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001439.1-P	Field mustard	cytosol	86.1	86.88
CDX73833	Canola	cytosol	86.1	86.88
CDY00758	Canola	cytosol	86.1	86.88
Bra038701.1-P	Field mustard	cytosol	85.65	86.04
CDY08447	Canola	cytosol	85.65	86.04
CDY42133	Canola	cytosol	85.65	86.04
CDY50568	Canola	cytosol	85.65	86.04
CDY52622	Canola	cytosol	85.65	86.04
AT3G12160.1	Thale cress	cytosol	85.65	86.04
VIT_13s0064g01300.t01	Wine grape	cytosol	84.3	83.19
KRH33003	Soybean	cytosol	83.86	83.11
KRH71891	Soybean	cytosol	81.61	81.61
Solyc10g079030.1.1	Tomato	plastid	82.06	80.97
Solyc03g064020.2.1	Tomato	cytosol	81.17	80.8
PGSC0003DMT400021064	Potato	cytosol	81.61	80.53
PGSC0003DMT400033664	Potato	cytosol	80.27	79.91
KRH75359	Soybean	endoplasmic reticulum	79.82	79.82
KRG88929	Soybean	cytosol	79.82	79.82
Bra034771.1-P	Field mustard	cytosol	85.65	72.62
VIT_07s0191g00030.t01	Wine grape	cytosol	73.54	72.57
VIT_12s0035g01140.t01	Wine grape	extracellular	60.09	62.33
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	60.54	62.21
VIT_10s0003g00550.t01	Wine grape	cytosol	59.19	60.83
VIT_19s0014g01820.t01	Wine grape	cytosol	58.3	59.91
VIT_12s0028g02650.t01	Wine grape	cytosol	56.5	58.33
VIT_15s0048g03000.t01	Wine grape	cytosol	61.44	57.32
VIT_13s0019g02470.t01	Wine grape	cytosol	60.54	56.02
VIT_19s0014g01160.t01	Wine grape	extracellular	59.19	52.38

Protein Annotations

EntrezGene:100252119	wikigene:100252119	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A5AWW7	EMBL:AM438608
ProteinID:CAN62934	ProteinID:CAN62934.1	ProteinID:CBI29902	ProteinID:CBI29902.3	EMBL:FN595991	GO:GO:0000003
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005515
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005794	GO:GO:0008150	GO:GO:0009653	GO:GO:0009856	GO:GO:0009860	GO:GO:0009987
GO:GO:0016043	GO:GO:0016049	GO:GO:0016787	GO:GO:0019900	GO:GO:0030154	GO:GO:0040007
GO:GO:0045177	GO:GO:0048868	GO:GO:0070382	GO:GO:0080092	GO:GO:0090404	EntrezGene:LOC100252119
wikigene:LOC100252119	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000151FB28	ArrayExpress:VIT_08s0007g07800
EnsemblPlantsGene:VIT_08s0007g07800	EnsemblPlants:VIT_08s0007g07800.t01	RefSeq:XP_002282798	RefSeq:XP_002282798.1	SEG:seg	:

Description

No Description!

Coordinates

chr8:-:21240777..21242740

Molecular Weight (calculated)

24460.1 Da

IEP (calculated)

6.540

GRAVY (calculated)

-0.195

Length

223 amino acids

Sequence
(BLAST)

001: MSNLYGDFNQ KIDYVFKVVL IGDSAVGKSQ LLARFARNEF NVDSKATIGV EFQTKTLAID QKAVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMARWL EELRGHADKN IVIMLIGNKS DLGSLRAVPT EDAQEFAERE NLFFMETSAL EATNVETAFL TVLTDIYKII SKKTLTANTD TDSTGSSTLL
201: KGTKIIVPGG PDSAAQKGGC CGS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.