Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50568 | Canola | cytosol | 99.1 | 99.1 |
| Bra038701.1-P | Field mustard | cytosol | 99.1 | 99.1 |
| CDY52622 | Canola | cytosol | 99.1 | 99.1 |
| CDY00758 | Canola | cytosol | 98.2 | 98.64 |
| CDX73833 | Canola | cytosol | 97.75 | 98.19 |
| Bra001439.1-P | Field mustard | cytosol | 97.75 | 98.19 |
| KRH33003 | Soybean | cytosol | 88.29 | 87.11 |
| VIT_08s0007g07800.t01 | Wine grape | cytosol | 86.04 | 85.65 |
| KRH71891 | Soybean | cytosol | 84.68 | 84.3 |
| Solyc10g079030.1.1 | Tomato | plastid | 83.33 | 81.86 |
| PGSC0003DMT400033664 | Potato | cytosol | 81.98 | 81.25 |
| Solyc03g064020.2.1 | Tomato | cytosol | 81.53 | 80.8 |
| PGSC0003DMT400021064 | Potato | cytosol | 81.98 | 80.53 |
| AT5G47960.1 | Thale cress | cytosol | 77.48 | 77.13 |
| AT5G65270.1 | Thale cress | cytosol | 70.72 | 69.47 |
| AT4G39990.1 | Thale cress | cytosol | 66.67 | 66.07 |
| AT1G07410.1 | Thale cress | cytosol | 59.01 | 61.22 |
| AT5G59150.1 | Thale cress | cytosol | 59.46 | 60.83 |
| AT1G09630.1 | Thale cress | cytosol | 59.46 | 60.83 |
| AT3G46830.1 | Thale cress | cytosol | 58.56 | 59.91 |
| AT1G16920.1 | Thale cress | cytosol | 58.11 | 59.72 |
| AT5G60860.1 | Thale cress | cytosol | 58.11 | 59.45 |
| AT3G15060.1 | Thale cress | cytosol | 58.11 | 59.45 |
| AT1G28550.1 | Thale cress | cytosol | 58.11 | 59.17 |
| AT4G18430.1 | Thale cress | cytosol | 57.66 | 58.99 |
| AT4G18800.1 | Thale cress | cytosol | 56.76 | 58.88 |
| AT5G45750.1 | Thale cress | cytosol | 57.21 | 58.8 |
| AT1G06400.1 | Thale cress | cytosol | 56.76 | 58.33 |
| AT2G33870.1 | Thale cress | cytosol | 57.21 | 58.26 |
| AT1G01200.1 | Thale cress | cytosol | 59.46 | 55.7 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EntrezGene:820393 | UniProt:A0A178V6M2 | ProteinID:AAG51053.1 | ProteinID:AAG51065.1 |
| ProteinID:AEE75160.1 | ArrayExpress:AT3G12160 | EnsemblPlantsGene:AT3G12160 | RefSeq:AT3G12160 | TAIR:AT3G12160 | RefSeq:AT3G12160-TAIR-G |
| EnsemblPlants:AT3G12160.1 | TAIR:AT3G12160.1 | Symbol:ATRABA4D | ProteinID:BAB01966.1 | EMBL:DQ056590 | GO:GO:0000003 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009653 | GO:GO:0009856 | GO:GO:0009860 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016049 | GO:GO:0016787 |
| GO:GO:0019900 | GO:GO:0030154 | GO:GO:0030659 | GO:GO:0031410 | GO:GO:0040007 | GO:GO:0045177 |
| GO:GO:0048868 | GO:GO:0070382 | GO:GO:0080092 | GO:GO:0090404 | RefSeq:NP_187823.1 | ProteinID:OAP01381.1 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000084 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF863 | UniProt:Q9LH50 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00000A00F2 | : | : |
Description
RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
Coordinates
chr3:-:3879276..3880669
Molecular Weight (calculated)
24721.5 Da
IEP (calculated)
5.882
GRAVY (calculated)
-0.275
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.