Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54519 | Canola | cytosol | 95.07 | 95.07 |
| CDX86332 | Canola | cytosol | 94.62 | 94.62 |
| Bra037516.1-P | Field mustard | cytosol | 94.17 | 94.17 |
| VIT_13s0064g01300.t01 | Wine grape | cytosol | 81.61 | 80.53 |
| GSMUA_Achr3P11810_001 | Banana | cytosol | 80.72 | 80.0 |
| EER96479 | Sorghum | cytosol | 80.72 | 79.65 |
| Zm00001d005504_P001 | Maize | cytosol, extracellular | 80.27 | 79.2 |
| GSMUA_Achr1P19620_001 | Banana | cytosol | 81.17 | 78.36 |
| AT3G12160.1 | Thale cress | cytosol | 77.13 | 77.48 |
| TraesCS5D01G179100.1 | Wheat | cytosol | 78.03 | 76.99 |
| TraesCS5A01G176000.1 | Wheat | cytosol | 78.03 | 76.99 |
| TraesCS5B01G171900.1 | Wheat | cytosol | 77.58 | 76.55 |
| AT5G65270.1 | Thale cress | cytosol | 68.16 | 67.26 |
| AT4G39990.1 | Thale cress | cytosol | 67.26 | 66.96 |
| AT4G18800.1 | Thale cress | cytosol | 59.64 | 62.15 |
| AT5G59150.1 | Thale cress | cytosol | 60.09 | 61.75 |
| AT3G46830.1 | Thale cress | cytosol | 59.64 | 61.29 |
| AT1G07410.1 | Thale cress | cytosol | 58.3 | 60.75 |
| AT5G45750.1 | Thale cress | cytosol | 58.74 | 60.65 |
| AT1G16920.1 | Thale cress | cytosol | 58.74 | 60.65 |
| AT5G60860.1 | Thale cress | cytosol | 58.74 | 60.37 |
| AT4G18430.1 | Thale cress | cytosol | 57.85 | 59.45 |
| AT1G09630.1 | Thale cress | cytosol | 57.85 | 59.45 |
| AT3G15060.1 | Thale cress | cytosol | 57.4 | 58.99 |
| AT1G28550.1 | Thale cress | cytosol | 57.4 | 58.72 |
| AT2G33870.1 | Thale cress | cytosol | 56.95 | 58.26 |
| AT1G06400.1 | Thale cress | cytosol | 55.61 | 57.41 |
| AT1G01200.1 | Thale cress | cytosol | 60.09 | 56.54 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EntrezGene:834847 | UniProt:A0A178UQI5 | ProteinID:AED95599.1 | EMBL:AF218121 |
| ArrayExpress:AT5G47960 | EnsemblPlantsGene:AT5G47960 | RefSeq:AT5G47960 | TAIR:AT5G47960 | RefSeq:AT5G47960-TAIR-G | EnsemblPlants:AT5G47960.1 |
| TAIR:AT5G47960.1 | Unigene:At.49142 | ProteinID:BAB09048.1 | EMBL:BT024842 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005794 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016787 | RefSeq:NP_199607.1 | ProteinID:OAO95740.1 |
| InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0020030 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF647 | UniProt:Q9FE79 |
| SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SMART:SM00177 | Symbol:SMG1 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI00000A4B56 | : |
Description
RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
Coordinates
chr5:-:19421340..19422533
Molecular Weight (calculated)
24840.5 Da
IEP (calculated)
6.551
GRAVY (calculated)
-0.318
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.