Factsheet for Zm00001d005504_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96479	Sorghum	cytosol	95.13	95.13
TraesCS5A01G176000.1	Wheat	cytosol	85.84	85.84
TraesCS5D01G179100.1	Wheat	cytosol	85.84	85.84
TraesCS5B01G171900.1	Wheat	cytosol	85.4	85.4
GSMUA_Achr3P11810_001	Banana	cytosol	83.63	84.0
VIT_13s0064g01300.t01	Wine grape	cytosol	83.63	83.63
Bra037516.1-P	Field mustard	cytosol	80.53	81.61
CDX86332	Canola	cytosol	80.53	81.61
CDY54519	Canola	cytosol	80.09	81.17
AT5G47960.1	Thale cress	cytosol	79.2	80.27
GSMUA_Achr1P19620_001	Banana	cytosol	81.42	79.65
Zm00001d048222_P001	Maize	extracellular, plasma membrane	71.24	74.19
Zm00001d014278_P001	Maize	extracellular, plasma membrane	71.24	74.19
Zm00001d028002_P001	Maize	mitochondrion	70.8	73.73
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	59.29	62.04
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	57.96	60.65
Zm00001d046313_P001	Maize	plastid	57.52	59.91
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	58.85	59.64
Zm00001d034675_P002	Maize	cytosol	56.64	59.53
Zm00001d043935_P001	Maize	cytosol	55.31	56.82
Zm00001d034802_P001	Maize	cytosol	55.31	53.42
Zm00001d034803_P001	Maize	cytosol	54.87	52.99
Zm00001d021246_P002	Maize	cytosol	56.64	51.61
Zm00001d037004_P002	Maize	cytosol	58.85	46.34

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:A0A1D6ENH9	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	ProteinID:ONM21351.1	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002219B7B	EnsemblPlantsGene:Zm00001d005504	EnsemblPlants:Zm00001d005504_P001	EnsemblPlants:Zm00001d005504_T001

Description

ras-related protein11E2Ras-related protein RABA4c

Coordinates

chr2:+:176567431..176570578

Molecular Weight (calculated)

25046.0 Da

IEP (calculated)

8.200

GRAVY (calculated)

-0.250

Length

226 amino acids

Sequence
(BLAST)

001: MSRGGSHGEL GQRIDYVFKV VLIGDSAVGK SQLLARFARN QFNLDSKATI GVEFQTRTLN IDARNVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRQSFDHVAR WLEELRGHAD KNIVIMLMGN KSDLGTLRAV PIEDAKEFAE RENLFFMETS ALEAINVENA FMTVLTEIYR TVSKKNLVAN EEPDSSGNSS
201: LLKGTKIVVP GQEPPSTLKA TCCMSS

Best Arabidopsis Sequence Match ( AT5G47960.1 )
(BLAST)

001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS

Arabidopsis Description

RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.