Factsheet for Zm00001d028002_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048222_P001	Maize	extracellular, plasma membrane	99.54	99.54
EER92725	Sorghum	cytosol	98.62	98.62
Zm00001d014278_P001	Maize	extracellular, plasma membrane	90.78	90.78
GSMUA_Achr8P18090_001	Banana	cytosol	83.41	83.03
GSMUA_Achr3P21290_001	Banana	cytosol	82.03	81.28
GSMUA_Achr3P01690_001	Banana	cytosol	82.03	81.28
Solyc11g010100.1.1	Tomato	cytosol	79.72	77.23
PGSC0003DMT400041813	Potato	cytosol	79.72	77.23
KRH31313	Soybean	endoplasmic reticulum	78.8	76.68
VIT_07s0191g00030.t01	Wine grape	cytosol	79.72	76.55
KRG97554	Soybean	cytosol, endoplasmic reticulum	78.34	76.23
Solyc04g012180.2.1	Tomato	cytosol, unclear	76.96	75.23
PGSC0003DMT400060649	Potato	cytosol	76.96	75.23
AT5G65270.1	Thale cress	cytosol	77.42	74.34
CDY18682	Canola	cytosol	76.96	74.22
Bra037810.1-P	Field mustard	cytosol	76.96	74.22
CDX69843	Canola	cytosol	75.58	73.54
KRH59301	Soybean	cytosol, endoplasmic reticulum	77.42	73.36
CDX81274	Canola	cytosol	76.5	73.13
CDX96994	Canola	cytosol	75.12	73.09
Bra009040.1-P	Field mustard	cytosol	75.12	73.09
Bra011818.1-P	Field mustard	cytosol	74.19	72.2
CDY69836	Canola	cytosol	74.19	71.88
Zm00001d005504_P001	Maize	cytosol, extracellular	73.73	70.8
AT4G39990.1	Thale cress	cytosol	72.81	70.54
KRH43151	Soybean	cytosol, endoplasmic reticulum	74.19	67.93
Zm00001d034675_P002	Maize	cytosol	59.91	60.47
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	59.45	59.72
CDX69367	Canola	cytosol	49.77	58.7
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	57.6	57.87
Zm00001d046313_P001	Maize	plastid	57.6	57.6
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	58.99	57.4
Zm00001d043935_P001	Maize	cytosol	55.3	54.55
Zm00001d034802_P001	Maize	cytosol	55.3	51.28
Zm00001d034803_P001	Maize	cytosol	54.38	50.43
Zm00001d021246_P002	Maize	cytosol	55.3	48.39
Zm00001d037004_P002	Maize	cytosol	58.53	44.25
CDX69369	Canola	cytosol	73.73	39.22

Protein Annotations

EntrezGene:100285194	MapMan:22.8.1.1	Gene3D:3.40.50.300	UniProt:B4G242	EMBL:BT043430	EMBL:EU971209
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	ProteinID:ONL94455.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00017B7F27	EnsemblPlantsGene:Zm00001d028002
EnsemblPlants:Zm00001d028002_P001	EnsemblPlants:Zm00001d028002_T001	:	:	:	:

Description

Ras-related protein RABA4a

Coordinates

chr1:-:19961083..19963559

Molecular Weight (calculated)

24017.7 Da

IEP (calculated)

8.213

GRAVY (calculated)

-0.242

Length

217 amino acids

Sequence
(BLAST)

001: MAGAGDKVDY VFKVVLIGDS AVGKSQILAR FARNEFSLDS KATIGVEFQT RTLVIDHRSV KAQIWDTAGQ ERYRAVTSAY YRGALGALLV YDITRRQSFD
101: HIPRWLDELR AHADKNIVIM LVGNKSDLEE QRAVSTEDAK EFAEKENLFF LETSALQATN VESSFQTVLT EIFKIHSKKN MVSEPKSNGA APAMPGTKVL
201: VPGPAQEIPK SKCCSSM

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.