CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31313	Soybean	endoplasmic reticulum	88.65	91.03
KRG97554	Soybean	cytosol, endoplasmic reticulum	87.77	90.13
KRH43151	Soybean	cytosol, endoplasmic reticulum	92.14	89.03
AT5G65270.1	Thale cress	cytosol	82.53	83.63
Bra037810.1-P	Field mustard	cytosol	81.66	83.11
CDY18682	Canola	cytosol	81.66	83.11
CDX81274	Canola	cytosol	81.22	81.94
CDX69843	Canola	cytosol	79.48	81.61
CDX96994	Canola	cytosol	79.04	81.17
Bra009040.1-P	Field mustard	cytosol	79.04	81.17
GSMUA_Achr3P01690_001	Banana	cytosol	77.29	80.82
Zm00001d014278_P001	Maize	extracellular, plasma membrane	75.98	80.18
GSMUA_Achr3P21290_001	Banana	cytosol	76.42	79.91
OQU91938	Sorghum	cytosol	75.55	79.72
GSMUA_Achr8P18090_001	Banana	cytosol	75.55	79.36
Os10t0377400-01	Rice	cytosol	74.67	79.17
TraesCS1D01G136900.1	Wheat	cytosol	74.24	78.7
TraesCS1B01G152100.1	Wheat	cytosol	74.24	78.7
TraesCS1A01G131500.2	Wheat	cytosol	74.24	78.7
AT4G39990.1	Thale cress	cytosol	76.86	78.57
Bra011818.1-P	Field mustard	cytosol	76.42	78.48
CDY69836	Canola	cytosol	76.42	78.12
Zm00001d048222_P001	Maize	extracellular, plasma membrane	73.8	77.88
EER92725	Sorghum	cytosol	73.8	77.88
Zm00001d028002_P001	Maize	mitochondrion	73.36	77.42
KRH75359	Soybean	endoplasmic reticulum	69.87	71.75
KRG88929	Soybean	cytosol	69.0	70.85
KRH33003	Soybean	cytosol	69.0	70.22
KRH71891	Soybean	cytosol	66.81	68.61
KRH15036	Soybean	cytosol, nucleus	60.26	63.89
KRH24729	Soybean	endoplasmic reticulum, nucleus	59.83	63.43
KRH29738	Soybean	endoplasmic reticulum	59.83	63.43
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	59.39	62.67
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	59.39	62.67
KRH27364	Soybean	endoplasmic reticulum	59.39	62.67
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	58.95	62.21
KRH26288	Soybean	endoplasmic reticulum	58.52	61.75
KRH06049	Soybean	endoplasmic reticulum	58.08	61.57
HORVU1Hr1G034400.4	Barley	plasma membrane	72.93	61.17
KRH50137	Soybean	cytosol, mitochondrion	57.21	60.37
KRH06418	Soybean	cytosol	64.19	60.25
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.21	60.09
KRH22259	Soybean	cytosol, nucleus	57.21	60.09
KRH47850	Soybean	cytosol	64.19	60.0
KRH20359	Soybean	cytosol, endoplasmic reticulum	56.33	59.45
KRH55839	Soybean	endoplasmic reticulum	55.46	58.53
KRH25681	Soybean	cytosol	55.46	58.53
KRH68938	Soybean	cytosol	60.26	58.47
KRH27503	Soybean	cytosol	58.08	58.33
KRH30863	Soybean	cytosol	55.02	58.06
KRG97215	Soybean	cytosol	59.83	58.05
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	54.59	57.6
KRH36458	Soybean	cytosol	57.21	57.46
KRH27001	Soybean	cytosol, endoplasmic reticulum	53.71	56.42
KRH22324	Soybean	cytosol, endoplasmic reticulum	52.84	55.5
CDX69369	Canola	cytosol	76.42	42.89

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02003316	EnsemblPlantsGene:GLYMA_05G176300	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:I1K4H5
EnsemblPlants:KRH59301	ProteinID:KRH59301	ProteinID:KRH59301.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0002339E11	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:36535180..36538472

Molecular Weight (calculated)

25227.8 Da

IEP (calculated)

5.787

GRAVY (calculated)

-0.321

Length

229 amino acids

Sequence
(BLAST)

001: MAGAGAGGGY GDANQRIDYV FKVVLIGDSA VGKSQILARF ARNEFSLDSK STIGVEFQTR TLVIDHKTVK AQIWDTAGQE RYRAVTSAYY RGAVGAMLVY
101: DITKRQTFDH IPRWLEELRN HADKNIVIIL TGNKCDLENQ RDVPTEDAKE FAEKEGLFFL ETSALEATNV ETAFITVLTE IYNIVNKKNL TADENQGNGN
201: SASLSGQKII VPGPAQEIPA KRNMCCQSS

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.