CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31313	Soybean	endoplasmic reticulum	95.96	95.96
KRH59301	Soybean	cytosol, endoplasmic reticulum	90.13	87.77
PGSC0003DMT400060649	Potato	cytosol	87.0	87.39
Solyc04g012180.2.1	Tomato	cytosol, unclear	86.55	86.94
VIT_07s0191g00030.t01	Wine grape	cytosol	87.89	86.73
Solyc11g010100.1.1	Tomato	cytosol	86.55	86.16
PGSC0003DMT400041813	Potato	cytosol	86.55	86.16
Zm00001d014278_P001	Maize	extracellular, plasma membrane	80.72	82.95
OQU91938	Sorghum	cytosol	79.82	82.03
Os10t0377400-01	Rice	cytosol	78.92	81.48
GSMUA_Achr3P01690_001	Banana	cytosol	79.82	81.28
KRH43151	Soybean	cytosol, endoplasmic reticulum	85.65	80.59
TraesCS1B01G152100.1	Wheat	cytosol	78.03	80.56
TraesCS1A01G131500.2	Wheat	cytosol	78.03	80.56
TraesCS1D01G136900.1	Wheat	cytosol	78.03	80.56
GSMUA_Achr8P18090_001	Banana	cytosol	78.48	80.28
GSMUA_Achr3P21290_001	Banana	cytosol	78.48	79.91
Zm00001d048222_P001	Maize	extracellular, plasma membrane	76.68	78.8
EER92725	Sorghum	cytosol	76.68	78.8
Zm00001d028002_P001	Maize	mitochondrion	76.23	78.34
KRH75359	Soybean	endoplasmic reticulum	71.3	71.3
KRG88929	Soybean	cytosol	70.4	70.4
KRH33003	Soybean	cytosol	69.96	69.33
KRH71891	Soybean	cytosol	66.82	66.82
CDX69367	Canola	cytosol	52.91	64.13
KRH15036	Soybean	cytosol, nucleus	61.44	63.43
HORVU1Hr1G034400.4	Barley	plasma membrane	77.13	63.0
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	60.54	62.21
KRH29738	Soybean	endoplasmic reticulum	59.64	61.57
KRH24729	Soybean	endoplasmic reticulum, nucleus	59.64	61.57
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	59.64	61.29
KRH06418	Soybean	cytosol	66.37	60.66
KRH47850	Soybean	cytosol	66.37	60.41
KRH26288	Soybean	endoplasmic reticulum	58.74	60.37
KRH68938	Soybean	cytosol	63.68	60.17
KRH06049	Soybean	endoplasmic reticulum	57.85	59.72
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	57.85	59.45
KRH27364	Soybean	endoplasmic reticulum	57.85	59.45
KRG97215	Soybean	cytosol	62.78	59.32
KRH22259	Soybean	cytosol, nucleus	56.95	58.26
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	56.95	58.26
KRH50137	Soybean	cytosol, mitochondrion	55.61	57.14
KRH20359	Soybean	cytosol, endoplasmic reticulum	54.71	56.22
KRH55839	Soybean	endoplasmic reticulum	53.81	55.3
KRH25681	Soybean	cytosol	53.81	55.3
KRH30863	Soybean	cytosol	53.81	55.3
KRH27503	Soybean	cytosol	56.5	55.26
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	53.36	54.84
KRH36458	Soybean	cytosol	55.61	54.39
KRH27001	Soybean	cytosol, endoplasmic reticulum	51.57	52.75
KRH22324	Soybean	cytosol, endoplasmic reticulum	51.12	52.29

Protein Annotations

EntrezGene:100791062	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02010800	EnsemblPlantsGene:GLYMA_18G015700	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005794	GO:GO:0016787
UniProt:I1MYQ4	EnsemblPlants:KRG97554	ProteinID:KRG97554	ProteinID:KRG97554.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000233E9C0	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:1114239..1117652

Molecular Weight (calculated)

24867.6 Da

IEP (calculated)

8.196

GRAVY (calculated)

-0.317

Length

223 amino acids

Sequence
(BLAST)

001: MASGRSYGDA NQKVDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSIKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: KRQSFDHIPR WLEELRNHAD KNIVIILIGN KSDLENQRQV PTEDAKEFAE KEGLFFLETS ALEATNVETA FMTVLTEIFN IINKKNLAAS DNQGNDNSAS
201: LSGKKIIVPG PAQEIPKRSM CCQ

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.