CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	98.62	98.62
AT1G16920.1	Thale cress	cytosol	88.48	88.89
CDY35128	Canola	cytosol	87.56	87.96
Bra026016.1-P	Field mustard	cytosol	87.1	87.5
CDY40023	Canola	cytosol	87.1	87.5
CDX96799	Canola	cytosol	87.1	87.5
GSMUA_Achr4P02540_001	Banana	cytosol	76.04	85.94
GSMUA_Achr3P15680_001	Banana	plasma membrane	83.41	83.41
GSMUA_Achr8P27780_001	Banana	cytosol	69.12	83.33
GSMUA_Achr9P05610_001	Banana	cytosol	82.49	83.26
EES19812	Sorghum	cytosol	83.87	82.73
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.03	81.65
KRH22259	Soybean	cytosol, nucleus	82.03	81.65
TraesCS3A01G289600.1	Wheat	cytosol	82.49	81.0
TraesCS3B01G324300.1	Wheat	cytosol, golgi	82.03	80.54
TraesCS3D01G289400.1	Wheat	cytosol	81.57	80.09
VIT_19s0014g01160.t01	Wine grape	extracellular	92.63	79.76
KRH20359	Soybean	cytosol, endoplasmic reticulum	78.34	78.34
KRH50137	Soybean	cytosol, mitochondrion	78.34	78.34
KRH30863	Soybean	cytosol	77.42	77.42
GSMUA_Achr6P31790_001	Banana	cytosol	58.99	77.11
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	76.96	76.96
KRH25681	Soybean	cytosol	76.96	76.96
KRH55839	Soybean	endoplasmic reticulum	76.5	76.5
KRH22324	Soybean	cytosol, endoplasmic reticulum	74.19	73.85
KRH27001	Soybean	cytosol, endoplasmic reticulum	74.19	73.85
CDX81790	Canola	plastid	87.1	70.79
KRH29738	Soybean	endoplasmic reticulum	68.66	68.98
KRH24729	Soybean	endoplasmic reticulum, nucleus	68.66	68.98
KRH26288	Soybean	endoplasmic reticulum	68.66	68.66
KRH06049	Soybean	endoplasmic reticulum	67.74	68.06
KRH15036	Soybean	cytosol, nucleus	67.28	67.59
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	67.28	67.28
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	65.9	65.9
HORVU3Hr1G071740.1	Barley	plastid	82.03	62.24
KRH59301	Soybean	cytosol, endoplasmic reticulum	62.67	59.39
KRH71891	Soybean	cytosol	60.37	58.74
KRG97554	Soybean	cytosol, endoplasmic reticulum	59.45	57.85
KRH31313	Soybean	endoplasmic reticulum	58.99	57.4
KRH75359	Soybean	endoplasmic reticulum	58.53	56.95
KRH43151	Soybean	cytosol, endoplasmic reticulum	61.75	56.54
KRG88929	Soybean	cytosol	58.06	56.5
KRH33003	Soybean	cytosol	58.53	56.44
KRH36458	Soybean	cytosol	56.68	53.95
KRH27503	Soybean	cytosol	56.68	53.95
KRH68938	Soybean	cytosol	54.84	50.42
KRH06418	Soybean	cytosol	56.68	50.41
KRG97215	Soybean	cytosol	54.38	50.0
KRH47850	Soybean	cytosol	56.22	49.8

Protein Annotations

EntrezGene:100810759	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02007801	EMBL:BT098755	UniProt:C6TM07
EnsemblPlantsGene:GLYMA_12G230600	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	EnsemblPlants:KRH27364	ProteinID:KRH27364	ProteinID:KRH27364.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001B1715F	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:39043148..39046928

Molecular Weight (calculated)

24012.3 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.266

Length

217 amino acids

Sequence
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLNVDSK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHAT
101: FENVDRWLKE LRNHTDANIV VMLVGNKSDL RHLVAVSTED GKSYAEKESL YFMETSALEA TNVENAFAEV LTQIYRIVSK KAVEGAENGT ASVPAKGEKI
201: DLKNDVSALK RVGCCSS

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.