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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, endoplasmic reticulum, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 5
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, endoplasmic reticulum, mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH05675
KRH28917
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G60860.1 KRH05675 AT3G06540.1 21798944
AT5G60860.1 KRH28917 AT3G06540.1 21798944
AT5G60860.1 KRH76543 AT3G06540.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH30863 Soybean cytosol 96.77 96.77
KRH20359 Soybean cytosol, endoplasmic reticulum 94.93 94.93
KRH50137 Soybean cytosol, mitochondrion 93.55 93.55
KRH25681 Soybean cytosol 91.71 91.71
KRH55839 Soybean endoplasmic reticulum 91.24 91.24
VIT_10s0003g00550.t01 Wine grape cytosol 89.86 89.86
OQU89311 Sorghum cytosol 88.94 89.35
Os09t0327100-01 Rice plasma membrane 88.94 89.35
AT5G60860.1 Thale cress cytosol 88.94 88.94
TraesCS7D01G289000.1 Wheat cytosol 88.48 88.89
TraesCS7A01G285200.1 Wheat cytosol 88.48 88.89
HORVU5Hr1G056470.1 Barley cytosol, plasma membrane 88.02 88.43
TraesCS7B01G200600.1 Wheat cytosol 88.02 88.43
TraesCS5A01G184100.1 Wheat golgi, plastid 88.02 88.43
TraesCS5B01G182200.1 Wheat cytosol 87.56 87.96
TraesCS5D01G188900.1 Wheat cytosol 87.56 87.96
Os05t0564400-02 Rice plasma membrane 87.56 87.56
PGSC0003DMT400033395 Potato cytosol 86.64 87.04
CDX79548 Canola cytosol 78.8 86.8
CDX94631 Canola cytosol 87.1 86.7
Bra032914.1-P Field mustard cytosol 87.1 86.7
Bra030105.1-P Field mustard cytosol 87.1 86.7
CDY30818 Canola cytosol 87.1 86.7
CDY34094 Canola cytosol 87.1 86.7
EES19950 Sorghum cytosol 86.18 86.57
Zm00001d009572_P001 Maize cytosol, mitochondrion, plasma membrane 86.18 86.57
Solyc03g006270.2.1 Tomato cytosol 86.18 86.57
Bra010860.1-P Field mustard cytosol 85.71 86.51
CDX90160 Canola cytosol 85.71 86.51
CDY35757 Canola cytosol 86.64 86.24
CDY15659 Canola cytosol 86.64 86.24
AT1G28550.1 Thale cress cytosol 86.18 85.78
Bra001581.1-P Field mustard cytosol 86.18 85.78
CDX82451 Canola cytosol 86.18 85.78
AT3G15060.1 Thale cress cytosol 85.71 85.71
TraesCS1A01G398400.1 Wheat cytosol 85.25 85.65
Bra022959.1-P Field mustard cytosol 85.71 85.32
TraesCS1B01G426300.1 Wheat cytosol 84.79 85.19
TraesCS1D01G405900.1 Wheat cytosol 84.79 85.19
PGSC0003DMT400058784 Potato cytosol 84.33 85.12
Solyc10g008840.2.1 Tomato cytosol 84.33 85.12
CDX75804 Canola cytosol 85.25 84.86
GSMUA_Achr5P09130_001 Banana cytosol 84.79 84.79
Zm00001d039016_P001 Maize cytosol, mitochondrion, plasma membrane 84.33 84.72
AT2G33870.1 Thale cress cytosol 84.79 84.4
GSMUA_Achr3P15540_001 Banana cytosol 83.87 84.26
GSMUA_Achr1P11940_001 Banana cytosol 83.41 83.8
CDY20100 Canola cytosol 83.41 83.03
Bra021589.1-P Field mustard cytosol 83.41 83.03
GSMUA_Achr8P27180_001 Banana cytosol 82.03 82.41
KRH27001 Soybean cytosol, endoplasmic reticulum 81.57 81.19
GSMUA_Achr4P02760_001 Banana cytosol 70.97 81.05
KRH22324 Soybean cytosol, endoplasmic reticulum 81.11 80.73
AT4G18430.1 Thale cress cytosol 79.72 79.72
GSMUA_Achr1P04780_001 Banana cytosol 72.81 79.0
CDY55638 Canola cytosol 78.8 78.8
CDY01540 Canola cytosol 78.8 78.8
CDX76522 Canola cytosol 78.8 78.8
GSMUA_Achr7P14790_001 Banana cytosol 69.59 78.65
TraesCS3A01G247000.1 Wheat cytosol 78.8 78.44
TraesCS3D01G244500.1 Wheat cytosol 78.8 78.44
Bra021009.1-P Field mustard cytosol 78.34 78.34
Bra012597.1-P Field mustard cytosol 78.34 78.34
KRH27364 Soybean endoplasmic reticulum 76.96 76.96
KRH21946 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 76.96 76.96
KRH22259 Soybean cytosol, nucleus 75.12 74.77
OQU87300 Sorghum cytosol 75.12 74.43
KRH27074 Soybean cytosol, endoplasmic reticulum, mitochondrion, nucleus 74.65 74.31
Zm00001d043935_P001 Maize cytosol 75.12 74.09
CDY60884 Canola cytosol 73.73 71.75
KRH24729 Soybean endoplasmic reticulum, nucleus 68.66 68.98
KRH29738 Soybean endoplasmic reticulum 68.2 68.52
KRG97821 Soybean cytosol, endoplasmic reticulum, nucleus 68.2 68.2
KRH26288 Soybean endoplasmic reticulum 67.28 67.28
KRH06049 Soybean endoplasmic reticulum 66.82 67.13
KRH15036 Soybean cytosol, nucleus 66.82 67.13
KRH73103 Soybean cytosol, endoplasmic reticulum, nucleus 65.44 65.44
KRH71891 Soybean cytosol 60.37 58.74
GSMUA_Achr7P10970_001 Banana cytosol 67.74 58.1
KRH33003 Soybean cytosol 59.91 57.78
KRH75359 Soybean endoplasmic reticulum 57.6 56.05
KRG88929 Soybean cytosol 57.14 55.61
KRH36458 Soybean cytosol 58.06 55.26
KRH27503 Soybean cytosol 57.6 54.82
KRH31313 Soybean endoplasmic reticulum 56.22 54.71
KRH59301 Soybean cytosol, endoplasmic reticulum 57.6 54.59
KRG97554 Soybean cytosol, endoplasmic reticulum 54.84 53.36
KRH43151 Soybean cytosol, endoplasmic reticulum 56.68 51.9
KRH06418 Soybean cytosol 57.6 51.23
KRH47850 Soybean cytosol 57.14 50.61
KRH68938 Soybean cytosol 54.84 50.42
KRG97215 Soybean cytosol 54.84 50.42
TraesCS3B01G272300.1 Wheat cytosol 78.8 49.42
Protein Annotations
EntrezGene:100306448MapMan:22.8.1.1Gene3D:3.40.50.300UniProt:A0A0R0HYT3EMBL:ACUP02006152EnsemblPlantsGene:GLYMA_10G069600
GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525
GO:GO:0016787EnsemblPlants:KRH32712ProteinID:KRH32712ProteinID:KRH32712.1InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF649SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPaseTIGRFAMs:TIGR00231
UniParc:UPI00019AA8EE:::::
Description
hypothetical protein
Coordinates
chr10:-:6844179..6847098
Molecular Weight (calculated)
24189.5 Da
IEP (calculated)
5.406
GRAVY (calculated)
-0.284
Length
217 amino acids
Sequence
(BLAST)
001: MGAYRADEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSL ESKSTIGVEF ATRSIRVDDK VLKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV VMLVGNKADL RHLRAVSTEE TTNFAEREKT FFMETSALES LNVESAFTEV LTQIYHVVSK KALEIGDDPA ALPKGQTINV
201: GSRDDASAVK KDGCCSA
Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)
001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA
Arabidopsis Description
RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.