CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 2
peroxisome 1
plasma membrane 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92561
KRH34233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	KRG92561	AT5G47520.1	21798944
AT3G06540.1	KRH34233	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	91.11	90.78
KRH05675	Soybean	extracellular, vacuole	27.22	75.38
VIT_04s0044g00070.t01	Wine grape	peroxisome	56.62	56.12
Solyc02g082730.2.1	Tomato	extracellular	53.72	53.62
PGSC0003DMT400003853	Potato	peroxisome	52.81	52.62
AT3G06540.1	Thale cress	cytosol	53.36	52.22
CDY05274	Canola	plastid	52.63	51.69
Zm00001d004622_P001	Maize	cytosol	6.72	51.39
CDY24684	Canola	cytosol	52.45	51.06
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.53	50.0
Bra029586.1-P	Field mustard	peroxisome	51.36	49.91
CDY34947	Canola	cytosol, plastid, vacuole	49.0	49.27
GSMUA_Achr6P03390_001	Banana	peroxisome	40.83	45.73
Os01t0269100-01	Rice	plasma membrane	25.95	44.27
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	43.92	43.21
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	43.92	43.21
TraesCS3A01G185700.1	Wheat	cytosol	43.74	43.04
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	43.56	42.78
KXG32246	Sorghum	cytosol, nucleus, peroxisome	43.19	42.58
Zm00001d040408_P003	Maize	peroxisome	42.65	42.34
Zm00001d008269_P001	Maize	peroxisome	41.74	41.29
Zm00001d009201_P001	Maize	cytosol	11.07	36.09
KRG99022	Soybean	cytosol	5.81	27.35
KRH71651	Soybean	cytosol, nucleus, peroxisome	8.89	25.0
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	19.24	23.87
KRH59137	Soybean	endoplasmic reticulum	19.06	23.65
KRH42088	Soybean	cytosol	18.51	22.92
KRH49823	Soybean	cytosol, endoplasmic reticulum	18.33	22.7
KRH66563	Soybean	cytosol	13.97	13.82

Protein Annotations

Gene3D:1.10.405.10	EntrezGene:100781501	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EMBL:ACUP02006771
InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	EnsemblPlantsGene:GLYMA_11G085700	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005968	GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344
GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	UniProt:I1LIA8	InterPro:IPR036188
EnsemblPlants:KRH28917	ProteinID:KRH28917	ProteinID:KRH28917.1	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891
PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000233C3AC
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:6443737..6448624

Molecular Weight (calculated)

60564.3 Da

IEP (calculated)

4.438

GRAVY (calculated)

-0.093

Length

551 amino acids

Sequence
(BLAST)

001: MTQPQDPFSY PPIDPVNFDL IIVGTALSES VIAAAASAVG KTILHLDPNS FYGSHFASLS LHDLTSYLSS PHSLPSAAAT TTDSDDVVVI DFVQQPLCSD
101: AEIATYDESA FLSENSRKFS IDLGGPKALF CADKTIDLLM KSGAAQYLEF KGIDESFVYE ANAGLANVPD SRGSIFRDKK LSLKEKNQLM RFFKLVQQHL
201: DDTQEEKIPE EDLEIAFVSF LEKMKLPPKI KSILLYAIAM LDYDQDNNEV CIELLKTKDG IDSLALYSSS VGRFPNAPGA LLYPIYGEGE LPQAFCRRAA
301: VKGCIYVLRM SVVSLLMDKV TGSYKGVRLA SGQDLYSHQL ILDPSFMIPS PLSSSPRDFP SEKLQMLGQR DIKGMVARGI CITRSSIKPD VSNCSVVYPP
401: RSLYPEQLTS IKALQIGSNL AVCPAGTFIL YFSTMCNDAD EGKKLLKAAM NALLTLPVSG NSESIPSVQS DSEDIKPIVL WSAFYIQKLI MCKLEFISST
501: PTPDGNLNYD DLLDATRKLF NQMYPDEEFF PKSTSPEDPT DEDDNGLTLD S

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.