CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
plasma membrane 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92561
KRH34233

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	KRG92561	AT5G47520.1	21798944
AT3G06540.1	KRH34233	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28917	Soybean	cytosol, peroxisome, plastid	90.78	91.11
KRH05675	Soybean	extracellular, vacuole	31.28	86.93
VIT_04s0044g00070.t01	Wine grape	peroxisome	57.5	57.19
Solyc02g082730.2.1	Tomato	extracellular	54.25	54.35
PGSC0003DMT400003853	Potato	peroxisome	52.98	52.98
Zm00001d004622_P001	Maize	cytosol	6.87	52.78
AT3G06540.1	Thale cress	cytosol	52.98	52.04
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.69	51.39
CDY05274	Canola	plastid	51.9	51.16
CDY24684	Canola	cytosol	51.72	50.53
Bra029586.1-P	Field mustard	peroxisome	50.63	49.38
CDY34947	Canola	cytosol, plastid, vacuole	48.46	48.91
GSMUA_Achr6P03390_001	Banana	peroxisome	41.23	46.34
Os01t0269100-01	Rice	plasma membrane	26.04	44.58
TraesCS3A01G185700.1	Wheat	cytosol	43.94	43.39
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	43.94	43.39
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	43.94	43.32
KXG32246	Sorghum	cytosol, nucleus, peroxisome	43.4	42.93
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	43.4	42.86
Zm00001d040408_P003	Maize	peroxisome	42.68	42.52
Zm00001d008269_P001	Maize	peroxisome	41.77	41.47
Zm00001d009201_P001	Maize	cytosol	11.39	37.28
KRG99022	Soybean	cytosol	5.79	27.35
KRH71651	Soybean	cytosol, nucleus, peroxisome	8.68	24.49
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	19.17	23.87
KRH59137	Soybean	endoplasmic reticulum	18.99	23.65
KRH42088	Soybean	cytosol	18.63	23.15
KRH49823	Soybean	cytosol, endoplasmic reticulum	18.44	22.92
KRH66563	Soybean	cytosol	13.92	13.82

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EMBL:ACUP02000619	InterPro:FAD/NAD-bd_sf
InterPro:GDP_dissociation_inhibitor	EnsemblPlantsGene:GLYMA_01G159000	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005968
GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0017137	GO:GO:0018344	GO:GO:0019538
GO:GO:0030234	GO:GO:0043547	GO:GO:0050790	UniProt:I1J8C9	InterPro:IPR036188	EnsemblPlants:KRH76543
ProteinID:KRH76543	ProteinID:KRH76543.1	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891	PANTHER:PTHR11787
PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0002337A08	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:49697320..49702855

Molecular Weight (calculated)

60598.3 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.086

Length

553 amino acids

Sequence
(BLAST)

001: MTEPQDPFSY PPIDPVNFDL IIVGTALSES VIAAAASAVG KTILHLDPNS FYGSHFASLS LHDLTSYLTS PHSLPSAATA AASSDSDDIV VVDLVHQPLC
101: TDAETATYDE SAFLSENSRK FNIDLGGPRA LFCADKTIDL LMKSGAAQYL EFKGIDESFV YEANAGLANV PDSRGAIFRD KKLSLKEKNQ LMRFFKLVQQ
201: HLDDTQEEKI PKEDLEIPFV SFLEKMKLPP KIKSILLYAI AMLDYDQDNN EVCEELLKTK DGIDCLAQYS SSVGRFPNAP GALLYPIYGE GELPQAFCRR
301: AAVKGCIYVL RMPVVSLLMD KVTGSYKGVR LASGQDLYSH QLILDPSFTI PSPLSLSLGD FPSERLQMLS QRDIKGMVAR GICITRSSIK PDVSSCSVVY
401: PPRSLYPEQV TSIKALQIGS NLAVCPAGTF ILYLSTLCND ADEGKKLLKA AMNALLTLPV SGNSESIPSV QSDSEDIKPI VLWSAFYIQK LIMSKFEFIS
501: STPTPDGNLN YNALLDATEK LFNQMYPNEE FFPKATSPED PTDEDDNGLT LDS

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.