Factsheet for Bra029586.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 2
peroxisome 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017482.1-P
Bra022136.1-P
Bra024937.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G06540.1	Bra017482.1-P	AT5G47520.1	21798944
AT3G06540.1	Bra022136.1-P	AT5G47520.1	21798944
AT3G06540.1	Bra024937.1-P	AT5G47520.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24684	Canola	cytosol	95.24	95.41
AT3G06540.1	Thale cress	cytosol	75.84	76.38
VIT_04s0044g00070.t01	Wine grape	peroxisome	52.03	53.06
Zm00001d004622_P001	Maize	cytosol	6.7	52.78
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	6.53	51.39
KRH28917	Soybean	cytosol, peroxisome, plastid	49.91	51.36
KRH76543	Soybean	cytosol, peroxisome, plasma membrane	49.38	50.63
Solyc02g082730.2.1	Tomato	extracellular	46.74	48.01
PGSC0003DMT400003853	Potato	peroxisome	46.74	47.92
Os01t0269100-01	Rice	plasma membrane	27.16	47.68
KRH05675	Soybean	extracellular, vacuole	15.34	43.72
KXG32246	Sorghum	cytosol, nucleus, peroxisome	43.03	43.65
GSMUA_Achr6P03390_001	Banana	peroxisome	37.74	43.5
HORVU3Hr1G038200.3	Barley	cytosol, nucleus, peroxisome	42.86	43.32
Zm00001d040408_P003	Maize	peroxisome	41.98	42.88
TraesCS3A01G185700.1	Wheat	cytosol	42.15	42.68
TraesCS3B01G215300.1	Wheat	cytosol, nucleus, peroxisome	42.15	42.68
Zm00001d008269_P001	Maize	peroxisome	41.8	42.55
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	41.8	42.32
Zm00001d009201_P001	Maize	cytosol	11.82	39.65
Bra004805.1-P	Field mustard	cytosol	19.93	25.45
Bra009390.1-P	Field mustard	cytosol	19.93	25.39
Bra014523.1-P	Field mustard	cytosol	19.75	25.23
Bra003395.1-P	Field mustard	cytosol	19.75	25.23
Bra006026.1-P	Field mustard	cytosol	19.4	25.06
Bra007493.1-P	Field mustard	cytosol	19.58	24.94
Bra028630.1-P	Field mustard	cytosol	19.75	18.27
Bra007490.1-P	Field mustard	cytosol	7.41	10.34

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.1.3	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra029586	EnsemblPlants:Bra029586.1
EnsemblPlants:Bra029586.1-P	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005096
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005968	GO:GO:0006464	GO:GO:0006810	GO:GO:0006886	GO:GO:0007154
GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0017137	GO:GO:0018344	GO:GO:0019538	GO:GO:0030234	GO:GO:0043547	GO:GO:0050790
GO:GO:2000541	InterPro:IPR036188	UniProt:M4ELB8	PFAM:PF00996	PIRSF:PIRSF016550	PRINTS:PR00891
PANTHER:PTHR11787	PANTHER:PTHR11787:SF23	InterPro:Rab_escort	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI000254818C
SEG:seg	:	:	:	:	:

Description

AT3G06540 (E=1e-231) | GDP dissociation inhibitor family protein / Rab GTPase activator family protein

Coordinates

chrA05:+:23133145..23135829

Molecular Weight (calculated)

61084.0 Da

IEP (calculated)

4.468

GRAVY (calculated)

-0.002

Length

567 amino acids

Sequence
(BLAST)

001: MSDLPPYPPL DPTTYDLIIV GTGVPSPILA AAASSSGSSS VLHLDPNPFY GSHSASLSLP DLTSFLHSNS LSPPSPPPPS DTPDFLSVDL ATRSLYSSVE
101: IATFDSSILD ERHSRKFNVD LCGPRVLFCA DESINLMLRS GSNNYVEFKS VDASFVGDSS GELRSVPDSR AAIFKDKSLG LMEKKQLMKF FKLVQAHLAA
201: SSTERDEGVV KIAEEDMESP FVEFLAKMPL PPKIKSIILY GIAMVDYDQD NVEACGDLLK TKEGIARLAL YITSIGRFSN ALGALIYPIY GQGELPQAFC
301: RRAAVKGCIY VLRMPITALL LDKASESVVV ETGGYKGVRL ATGQEIFSQK LILDPCITVG SESMSTLTDQ QKETLRVLVP KSISSEGKIA RGICIIRGSV
401: KADISNALVV YPPKSLFPEQ LAAIRVLQLG SGLAVCPADM HVLYFSTVCE NDDQGKAALL SAMSTLIKPQ VPENLQSDSA VENDTAEAAK PVVLWRALYV
501: QAMVKGEFGG SISSAASPDG NLNYNEMVES AVKLYEQLMG SEELFKEETS LDNTTEEEND GGVEIEA

Best Arabidopsis Sequence Match ( AT3G06540.1 )
(BLAST)

001: MIDIPPYPPL DPSNYDLIVV GTGVSESVLA AAASSSGSSV LHLDPNPFYG SHFASLSLPD LTSFLHSNSV SPPPSPSSPP LPPSNNHDFI SVDLVNRSLY
101: SSVEISSFES EILEEHSRRF NVDLAGPRVV FCADESINLM LKSGANNYVE FKSIDASFVG DSSGELRNVP DSRAAIFKDK SLTLLEKNQL MKFFKLVQSH
201: LASSTEKDDS TTVKISEEDM ESPFVDFLSK MRLPPKIKSI ILYAIAMLDY DQDNTETCRH LLKTKEGIDR LALYITSMGR FSNALGALIY PIYGQGELPQ
301: AFCRRAAVKG CIYVLRMPIT ALLLDKETGG YKGVRLASGQ EIFSQKLILD PCVTVGLESL SSLTDQQNET LSVLVPKSMI NKEKIARGVC VIRGSVKANV
401: SNALVVYPPK SLFPEQLTAI RVLQLGSGLA VCPADMHVLY LSTLCDNDDQ GIKALLSAMS NLISLPVPEN RQSDSVVEND TSETKPILLW RALYVQELVK
501: GEFGGTISSM PSPDGNLNYN EIVESAVKLY EKLMGSEELF KEETSPAENT TEEENDGGVE IED

Arabidopsis Description

REPRab escort protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8LLD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.