Factsheet for Bra028630.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, golgi
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra006026.1-P	Field mustard	cytosol	69.17	96.58
Bra009390.1-P	Field mustard	cytosol	69.82	96.18
AT5G09550.1	Thale cress	cytosol	69.0	95.06
KRH49823	Soybean	cytosol, endoplasmic reticulum	61.83	85.17
KRH42088	Soybean	cytosol	61.34	84.49
VIT_03s0017g00490.t01	Wine grape	cytosol	49.1	82.47
Solyc01g105810.2.1	Tomato	cytosol, unclear	59.38	81.8
TraesCS4B01G205900.1	Wheat	cytosol, golgi	59.05	80.98
Os03t0277000-01	Rice	plasma membrane	58.89	80.76
EER92083	Sorghum	cytosol	58.89	80.76
Zm00001d029596_P001	Maize	cytosol, extracellular	58.73	80.54
TraesCS4D01G206900.1	Wheat	cytosol	58.73	80.54
Bra003395.1-P	Field mustard	cytosol	55.3	76.35
Bra014523.1-P	Field mustard	cytosol	54.81	75.68
Bra004805.1-P	Field mustard	cytosol	54.81	75.68
Bra007493.1-P	Field mustard	cytosol	54.32	74.83
TraesCS4A01G098400.1	Wheat	cytosol	58.89	74.59
CDY44805	Canola	cytosol	73.9	72.02
GSMUA_Achr7P02930_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, plasma membrane, plastid, vacuole	12.23	65.22
GSMUA_Achr7P02920_001	Banana	cytosol	9.95	59.8
HORVU4Hr1G059230.1	Barley	cytosol	5.71	49.3
Bra007490.1-P	Field mustard	cytosol	19.09	28.82
Bra029586.1-P	Field mustard	peroxisome	18.27	19.75

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra028630	EnsemblPlants:Bra028630.1
EnsemblPlants:Bra028630.1-P	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790
InterPro:IPR036188	UniProt:M4EIL5	PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787
PANTHER:PTHR11787:SF10	InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI00025435BB	SEG:seg

Description

AT5G09550 (E=3e-248) | RAB GDP-dissociation inhibitor

Coordinates

chrA02:-:1372697..1377766

Molecular Weight (calculated)

68076.0 Da

IEP (calculated)

6.138

GRAVY (calculated)

-0.499

Length

613 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PQENLGAIRE YNVDMIPKFI MANGTLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDGYLDQP
201: AMDFVMRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DSSGKAIGVT SAGETAKCKK VVCDPSYLSD KVKKVGKVNR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DSPEEELKPG IELLGPIDEI FYHSYDTYVP TNKQEEDNCF
401: ISGTYDATTH FESTVSDVLE MYTKITGKTL DLSVDLSAAS RSSPRPRSTA SHSPSIHTER SSPRPSSYSS PPKTGRSTPR TAGYTPSPQT ASHDSHSSEN
501: TSNDHGFFSR GRSSSSDDAY DFFRRRRRSS SDDEGMFSGF IDEIKDAIEN YRTSKKDPVA AAAEVASTSG SIACVTQAKA FQDCLDENET DINKCQSLMD
601: MWCKCKKSSK LTT

Best Arabidopsis Sequence Match ( AT5G09550.1 )
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESSSLNLTQ LWKRFRGSDT PEENLGASRE YNVDMIPKFI MANGLLVQTL IHTDVTKYLN
101: FKAVDGSFVY KKGKIYKVPA TDVEALKSPL MGLFEKRRAR KFFIYVQDYD EKDPKSHEGL DLSKVTAREI ISKYGLEDDT IDFIGHALAL HNDDDYLDQP
201: AIDFVKRIKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DGSGKAIGVT SAGETAKCKK VVCDPSYLSE KVKKVGKVTR
301: AVCIMSHPIP DTNDAHSVQI ILPQKQLGRK SDMYLFCCSY AHNVAPKGKY IAFVSAEAET DNPEEELKPG IELLGPTDEI FYHSYDTYVP TNIQEEDNCF
401: ISATYDATTH FESTVVDVLD MYTKITGKTL DLSVDLSAAS AAAEN

Arabidopsis Description

Guanosine nucleotide diphosphate dissociation inhibitor At5g09550 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXC0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.