Factsheet for Bra007493.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016705.1-P
Bra019660.1-P
Bra024839.1-P
Bra024840.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Bra016705.1-P	AT1G14340.1	21798944
AT3G59920.1	Bra019660.1-P	AT1G14340.1	21798944
AT3G59920.1	Bra024839.1-P	AT2G01950.1	19000166
AT3G59920.1	Bra024840.1-P	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05962	Canola	cytosol	98.2	98.42
Bra003395.1-P	Field mustard	cytosol	95.28	95.5
Bra014523.1-P	Field mustard	cytosol	95.06	95.27
AT3G59920.1	Thale cress	cytosol	93.48	93.69
Bra004805.1-P	Field mustard	cytosol	90.34	90.54
HORVU1Hr1G064490.8	Barley	cytosol	84.72	84.34
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	84.27	84.27
KRH59137	Soybean	endoplasmic reticulum	84.04	84.23
Os05t0304400-01	Rice	plasma membrane	84.04	84.04
TraesCS1D01G260900.1	Wheat	cytosol, golgi	84.04	84.04
TraesCS1B01G271700.1	Wheat	cytosol	84.04	84.04
TraesCS1A01G260900.1	Wheat	cytosol	84.04	84.04
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	83.82	84.01
GSMUA_Achr7P23620_001	Banana	cytosol	82.7	83.26
Solyc12g017570.1.1	Tomato	plastid	82.92	83.11
TraesCS1B01G271800.2	Wheat	cytosol, golgi	83.15	82.96
TraesCS1A01G261000.1	Wheat	cytosol	83.15	82.96
EES18242	Sorghum	cytosol	82.92	82.92
KXG22017	Sorghum	cytosol	82.92	82.92
VIT_05s0094g01550.t01	Wine grape	cytosol	82.02	82.21
PGSC0003DMT400035649	Potato	cytosol	81.35	81.53
Solyc08g015860.2.1	Tomato	extracellular	80.9	81.08
GSMUA_Achr6P18380_001	Banana	cytosol	81.35	80.98
Zm00001d010255_P001	Maize	cytosol, extracellular	82.47	80.84
TraesCS5B01G042400.1	Wheat	cytosol	79.78	79.78
TraesCS5A01G041100.1	Wheat	cytosol	79.78	79.78
EER98346	Sorghum	cytosol	79.55	79.37
Os07t0271000-01	Rice	plasma membrane	79.55	79.37
TraesCS5D01G048100.1	Wheat	cytosol	79.33	79.33
Zm00001d007315_P001	Maize	cytosol	31.69	79.21
Zm00001d010251_P003	Maize	cytosol	82.47	78.42
HORVU1Hr1G064480.1	Barley	cytosol	77.3	77.13
Bra006026.1-P	Field mustard	cytosol	75.06	76.08
Bra009390.1-P	Field mustard	cytosol	75.73	75.73
GSMUA_Achr10P...	Banana	cytosol	73.93	74.1
Zm00001d005498_P001	Maize	cytosol	80.45	72.47
Zm00001d038200_P002	Maize	plastid	82.25	72.05
TraesCS1D01G261000.1	Wheat	golgi	83.37	71.07
HORVU5Hr1G009840.1	Barley	cytosol	79.78	65.02
Zm00001d009786_P001	Maize	plastid	45.62	59.18
Zm00001d011867_P001	Maize	cytosol	46.74	56.83
Bra028630.1-P	Field mustard	cytosol	74.83	54.32
Zm00001d016318_P002	Maize	cytosol	32.81	51.59
HORVU2Hr1G104740.2	Barley	mitochondrion	10.56	50.0
HORVU7Hr1G075170.1	Barley	mitochondrion	11.91	48.18
Bra007490.1-P	Field mustard	cytosol	33.71	36.95
Bra029586.1-P	Field mustard	peroxisome	24.94	19.58

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EnsemblPlantsGene:Bra007493	EnsemblPlants:Bra007493.1
EnsemblPlants:Bra007493.1-P	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790
InterPro:IPR036188	UniProt:M4CTF0	PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787
PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905	UniParc:UPI0002542F4C	SEG:seg	:

Description

AT3G59920 (E=1e-239) ATGDI2 | ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor

Coordinates

chrA09:+:29478836..29481451

Molecular Weight (calculated)

49644.3 Da

IEP (calculated)

5.329

GRAVY (calculated)

-0.290

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV IHMDRNDYYG GESTSLYLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPV TPMEAMKSNL MGIFEKRRAG KFFGYVQDYD EKDPKTHNGM DLTKLTTKEL IAKFGLDDNT IDFIGHAIAL HTNDEHLHQP
201: ALDTVMRMKL YAESLARFQG SSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPDCTVEF DEEGKVTGVT SEGETAKCKK VVCDPSYLPN KVNKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKAG IDLLGPVDEI FFDMYDRYEP VNEPASDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQQ LDLSVDLSAA SAAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.