Factsheet for Os05t0418000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	golgi
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20433195
plastid: 21433289
plasma membrane: 27800704

msms PMID: 20433195 doi

A Pandey, U Rajamani, J Verma, P Subba, N Chakraborty, A Datta, S Chakraborty, N Chakraborty

National Institute of Plant Genome Research, Aruna Asaf Ali Marg, New Delhi-110067, India.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0641400-02
Os10t0114400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Os04t0641400-02	AT1G14340.1	21798944
AT3G59920.1	Os10t0114400-01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0304400-01	Rice	plasma membrane	98.2	98.2
KXG22017	Sorghum	cytosol	94.61	94.61
TraesCS1D01G260900.1	Wheat	cytosol, golgi	94.61	94.61
EES18242	Sorghum	cytosol	94.61	94.61
TraesCS1B01G271700.1	Wheat	cytosol	94.61	94.61
TraesCS1A01G260900.1	Wheat	cytosol	94.16	94.16
TraesCS1A01G261000.1	Wheat	cytosol	92.58	92.38
TraesCS1B01G271800.2	Wheat	cytosol, golgi	92.58	92.38
Zm00001d010255_P001	Maize	cytosol, extracellular	93.93	92.07
GSMUA_Achr7P23620_001	Banana	cytosol	89.21	89.82
Zm00001d010251_P003	Maize	cytosol	93.93	89.32
Solyc12g017570.1.1	Tomato	plastid	88.54	88.74
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	88.09	88.29
KRH59137	Soybean	endoplasmic reticulum	87.87	88.06
PGSC0003DMT400035649	Potato	cytosol	86.74	86.94
GSMUA_Achr6P18380_001	Banana	cytosol	87.19	86.8
VIT_05s0094g01550.t01	Wine grape	cytosol	86.52	86.71
Solyc08g015860.2.1	Tomato	extracellular	86.29	86.49
CDY17885	Canola	cytosol	85.84	86.04
CDX79782	Canola	cytosol	85.84	86.04
Bra004805.1-P	Field mustard	cytosol	85.84	86.04
CDX98399	Canola	cytosol	85.62	85.81
CDX67817	Canola	cytosol	85.62	85.81
Bra003395.1-P	Field mustard	cytosol	85.39	85.59
CDY45775	Canola	cytosol	85.17	85.36
AT2G44100.1	Thale cress	cytosol	85.17	85.17
CDX89038	Canola	cytosol	84.94	85.14
Bra014523.1-P	Field mustard	cytosol	84.94	85.14
AT3G59920.1	Thale cress	cytosol	84.72	84.91
Zm00001d007315_P001	Maize	cytosol	33.71	84.27
Bra007493.1-P	Field mustard	cytosol	84.27	84.27
Os07t0271000-01	Rice	plasma membrane	84.04	83.86
CDY05962	Canola	cytosol	83.6	83.78
CDX71860	Canola	cytosol	75.96	82.64
Zm00001d038200_P002	Maize	plastid	93.48	81.89
Os03t0277000-01	Rice	plasma membrane	81.8	81.43
GSMUA_Achr10P...	Banana	cytosol	80.45	80.63
TraesCS1D01G261000.1	Wheat	golgi	93.03	79.31
Zm00001d009786_P001	Maize	plastid	48.54	62.97
Zm00001d011867_P001	Maize	cytosol	50.56	61.48
HORVU7Hr1G075170.1	Barley	mitochondrion	13.71	55.45
HORVU2Hr1G104740.2	Barley	mitochondrion	11.69	55.32
Zm00001d016318_P002	Maize	cytosol	34.61	54.42
Os01t0269100-01	Rice	plasma membrane	16.63	22.91

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	EntrezGene:4338812	ProteinID:AAU10789.1
ProteinID:AAV25637.1	ProteinID:BAF17480.1	ProteinID:BAS94053.1	ProteinID:EEE63749.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188	EnsemblPlantsGene:Os05g0418000	EnsemblPlants:Os05t0418000-01
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	UniProt:Q688K0
InterPro:RabGDI	SUPFAM:SSF51905	UniParc:UPI000042ABF6	RefSeq:XP_015639765.1	SEG:seg	:

Description

GDP dissociation inhibitor 1, GDP dissociation inhibitor1, GDP dissociation inhibitor protein OsGDI1, GDP-dissociation inhibitor 1GDP dissociation inhibitor protein OsGDI1. (Os05t0418000-01)

Coordinates

chr5:+:20477376..20483599

Molecular Weight (calculated)

49700.3 Da

IEP (calculated)

5.466

GRAVY (calculated)

-0.286

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ LWKRFRGEDK PPAHLGASRD YNVDMVPKFM MANGTLVRTL IHTDVTKYLS
101: FKAVDGSYVF SKGKIHKVPA TDMEALKSPL MGLFEKRRAR NFFIYVQDYD EADPKTHQGL DLTTMTTREL IAKYGLSDDT VDFIGHALAL HRDDRYLNEP
201: AIDTVKRMKL YAESLARFQG GSPYIYPLYG LGELPQGFAR LSAVYGGTYM LNKPDCKVEF DMEGKVCGVT SEGETAKCKK VVCDPSYLPN KVRKIGKVAR
301: AIAIMSHPIA NTNDSHSVQI ILPQKQLGRK SDMYVFGCSY THNVAPKGKF IAFVSTEAET DHPESELKPG IDLLGQVDEL FFDIYDRYEP VNEPSLDNCF
401: VSTSYDATTH FETTVTDVLN MYTLITGKTV DLSVDLSAAS AAEEY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.