Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 6
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014523.1-P | Field mustard | cytosol | 100.0 | 100.0 |
| CDY45775 | Canola | cytosol | 99.55 | 99.55 |
| CDX67817 | Canola | cytosol | 97.3 | 97.3 |
| CDX98399 | Canola | cytosol | 97.3 | 97.3 |
| AT3G59920.1 | Thale cress | cytosol | 95.5 | 95.5 |
| CDY05962 | Canola | cytosol | 94.82 | 94.82 |
| CDX71860 | Canola | cytosol | 85.36 | 92.67 |
| CDX79782 | Canola | cytosol | 92.12 | 92.12 |
| CDY17885 | Canola | cytosol | 92.12 | 92.12 |
| KRH59137 | Soybean | endoplasmic reticulum | 85.59 | 85.59 |
| KRH43030 | Soybean | cytosol, endoplasmic reticulum, nucleus | 85.36 | 85.36 |
| HORVU1Hr1G064490.8 | Barley | cytosol | 85.81 | 85.23 |
| Os05t0418000-01 | Rice | cytosol, extracellular, plasma membrane, plastid | 85.14 | 84.94 |
| GSMUA_Achr7P23620_001 | Banana | cytosol | 84.46 | 84.84 |
| Os05t0304400-01 | Rice | plasma membrane | 84.91 | 84.72 |
| TraesCS1B01G271700.1 | Wheat | cytosol | 84.68 | 84.49 |
| TraesCS1D01G260900.1 | Wheat | cytosol, golgi | 84.68 | 84.49 |
| TraesCS1A01G260900.1 | Wheat | cytosol | 84.68 | 84.49 |
| Solyc12g017570.1.1 | Tomato | plastid | 84.46 | 84.46 |
| KXG22017 | Sorghum | cytosol | 84.23 | 84.04 |
| EES18242 | Sorghum | cytosol | 84.23 | 84.04 |
| TraesCS1A01G261000.1 | Wheat | cytosol | 84.23 | 83.86 |
| VIT_05s0094g01550.t01 | Wine grape | cytosol | 83.78 | 83.78 |
| TraesCS1B01G271800.2 | Wheat | cytosol, golgi | 84.01 | 83.63 |
| PGSC0003DMT400035649 | Potato | cytosol | 82.43 | 82.43 |
| GSMUA_Achr6P18380_001 | Banana | cytosol | 82.66 | 82.1 |
| Solyc08g015860.2.1 | Tomato | extracellular | 81.98 | 81.98 |
| Zm00001d010255_P001 | Maize | cytosol, extracellular | 83.78 | 81.94 |
| TraesCS5A01G041100.1 | Wheat | cytosol | 79.95 | 79.78 |
| TraesCS5B01G042400.1 | Wheat | cytosol | 79.95 | 79.78 |
| EER98346 | Sorghum | cytosol | 79.95 | 79.6 |
| Os07t0271000-01 | Rice | plasma membrane | 79.95 | 79.6 |
| Zm00001d010251_P003 | Maize | cytosol | 83.78 | 79.49 |
| TraesCS5D01G048100.1 | Wheat | cytosol | 79.5 | 79.33 |
| Zm00001d007315_P001 | Maize | cytosol | 31.76 | 79.21 |
| HORVU1Hr1G064480.1 | Barley | cytosol | 78.15 | 77.8 |
| CDY56553 | Canola | cytosol | 76.8 | 76.63 |
| CDX81131 | Canola | cytosol | 76.8 | 76.63 |
| CDY21587 | Canola | cytosol | 76.35 | 76.18 |
| GSMUA_Achr10P... | Banana | cytosol | 75.45 | 75.45 |
| CDX69899 | Canola | cytosol | 52.7 | 74.29 |
| Zm00001d005498_P001 | Maize | cytosol | 80.63 | 72.47 |
| Zm00001d038200_P002 | Maize | plastid | 82.88 | 72.44 |
| TraesCS1D01G261000.1 | Wheat | golgi | 84.46 | 71.84 |
| CDY65664 | Canola | cytosol | 62.61 | 67.8 |
| HORVU5Hr1G009840.1 | Barley | cytosol | 79.95 | 65.02 |
| CDY42416 | Canola | endoplasmic reticulum, extracellular | 16.22 | 60.5 |
| Zm00001d009786_P001 | Maize | plastid | 45.5 | 58.89 |
| Zm00001d011867_P001 | Maize | cytosol | 46.62 | 56.56 |
| CDY44805 | Canola | cytosol | 75.68 | 53.42 |
| HORVU2Hr1G104740.2 | Barley | mitochondrion | 11.26 | 53.19 |
| Zm00001d016318_P002 | Maize | cytosol | 32.88 | 51.59 |
| HORVU7Hr1G075170.1 | Barley | mitochondrion | 12.61 | 50.91 |
| CDX71865 | Canola | cytosol, mitochondrion | 26.35 | 36.91 |
| CDY05966 | Canola | cytosol | 33.56 | 36.7 |
| CDY23584 | Canola | cytosol, nucleus, peroxisome | 9.91 | 28.76 |
| CDY24684 | Canola | cytosol | 25.45 | 19.96 |
| CDY34947 | Canola | cytosol, plastid, vacuole | 23.87 | 19.34 |
| CDY05274 | Canola | plastid | 24.1 | 19.07 |
Protein Annotations
| Gene3D:1.10.405.10 | MapMan:22.8.4.2 | Gene3D:3.30.519.10 | Gene3D:3.50.50.60 | GO:A0A078DPE4 | EnsemblPlants:CDX89038 |
| ProteinID:CDX89038 | ProteinID:CDX89038.1 | InterPro:FAD/NAD-bd_sf | InterPro:GDP_dissociation_inhibitor | GO:GO:0003674 | GO:GO:0005092 |
| GO:GO:0005093 | GO:GO:0006810 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007264 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0015031 | GO:GO:0030234 | EnsemblPlantsGene:GSBRNA2T00149157001 | InterPro:IPR036188 | PFAM:PF00996 |
| PRINTS:PR00891 | PRINTS:PR00892 | PANTHER:PTHR11787 | PANTHER:PTHR11787:SF11 | InterPro:RabGDI | SUPFAM:SSF51905 |
| UniParc:UPI0002543FCD | : | : | : | : | : |
Description
BnaA04g01480D
Coordinates
chrLK031857:+:678692..681984
Molecular Weight (calculated)
49673.4 Da
IEP (calculated)
5.484
GRAVY (calculated)
-0.296
Length
444 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEDK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPV TPMEALKSPL MGIFEKRRAG KFFSYVQDYD EKDPKTHNGM DLTRLTTKEL IAKFGLDENT IDFIGHAVAL HTNDQHLNQP
201: ALDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVTGVT SEGETARCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKAG IDLLGPVDEI FFDVYDRYEP VNEPALDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS TEEE
101: FKAVDGSYVF VKGKVQKVPV TPMEALKSPL MGIFEKRRAG KFFSYVQDYD EKDPKTHNGM DLTRLTTKEL IAKFGLDENT IDFIGHAVAL HTNDQHLNQP
201: ALDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVTGVT SEGETARCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKAG IDLLGPVDEI FFDVYDRYEP VNEPALDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS TEEE
001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE
Arabidopsis Description
GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.