CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71865	Canola	cytosol, mitochondrion	52.1	19.56
CDX69899	Canola	cytosol	50.42	19.05
CDY17885	Canola	cytosol	66.39	17.79
CDX79782	Canola	cytosol	66.39	17.79
CDY05966	Canola	cytosol	58.82	17.24
CDX89038	Canola	cytosol	60.5	16.22
CDX98399	Canola	cytosol	60.5	16.22
CDX67817	Canola	cytosol	60.5	16.22
CDY45775	Canola	cytosol	60.5	16.22
CDY05962	Canola	cytosol	58.82	15.77
CDY21587	Canola	cytosol	50.42	13.48
CDY65664	Canola	cytosol	46.22	13.41
CDX81131	Canola	cytosol	49.58	13.26
CDY56553	Canola	cytosol	49.58	13.26
CDX71860	Canola	cytosol	45.38	13.2
CDY44805	Canola	cytosol	48.74	9.22
CDY23584	Canola	cytosol, nucleus, peroxisome	7.56	5.88
CDY34947	Canola	cytosol, plastid, vacuole	13.45	2.92
CDY24684	Canola	cytosol	13.45	2.83
CDY05274	Canola	plastid	10.92	2.32

Protein Annotations

Gene3D:3.30.519.10	MapMan:35.1	GO:A0A078HXE7	UniProt:A0A078HXE7	EnsemblPlants:CDY42416	ProteinID:CDY42416
ProteinID:CDY42416.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0030234	GO:GO:0050790	EnsemblPlantsGene:GSBRNA2T00074717001	InterPro:IPR036188	PFAM:PF00996
PANTHER:PTHR11787	PANTHER:PTHR11787:SF10	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0004EE7B97	:

Description

BnaC02g22920DBnaC02g22920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXE7]

Coordinates

chrLK032524:-:33263..34756

Molecular Weight (calculated)

13632.5 Da

IEP (calculated)

5.098

GRAVY (calculated)

-0.015

Length

119 amino acids

Sequence
(BLAST)

001: MITIEPGHVC LLLFLFPQLA PKGKFIAFVS TDAETDNPQT ELKPGIDLLG QVDELFFEIY DRYEPVNKPT LDNCCISTSY DATTHIDTTV VDVLNMYKLI
101: TGKWTFHPFI LKRKRYTLS

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.