CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42416	Canola	endoplasmic reticulum, extracellular	19.56	52.1
CDY05966	Canola	cytosol	59.62	46.55
CDX69899	Canola	cytosol	27.13	27.3
CDX89038	Canola	cytosol	36.91	26.35
CDY45775	Canola	cytosol	36.59	26.13
CDX67817	Canola	cytosol	36.59	26.13
CDX98399	Canola	cytosol	36.59	26.13
CDY05962	Canola	cytosol	36.59	26.13
CDY17885	Canola	cytosol	34.38	24.55
CDX79782	Canola	cytosol	34.38	24.55
CDX71860	Canola	cytosol	31.55	24.45
CDX81131	Canola	cytosol	29.65	21.12
CDY56553	Canola	cytosol	29.65	21.12
CDY21587	Canola	cytosol	29.02	20.67
CDY65664	Canola	cytosol	26.18	20.24
CDY44805	Canola	cytosol	29.65	14.94
CDY23584	Canola	cytosol, nucleus, peroxisome	3.79	7.84
CDY24684	Canola	cytosol	9.46	5.3
CDY34947	Canola	cytosol, plastid, vacuole	8.83	5.11
CDY05274	Canola	plastid	8.83	4.99

Protein Annotations

Gene3D:3.30.519.10	Gene3D:3.50.50.60	MapMan:35.1	GO:A0A078C4T6	EnsemblPlants:CDX71865	ProteinID:CDX71865
ProteinID:CDX71865.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093
GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150	GO:GO:0009987
GO:GO:0015031	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00155597001	InterPro:IPR036188	PFAM:PF00996	PRINTS:PR00892
PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905	SUPFAM:SSF54373	UniParc:UPI0004EBD849

Description

BnaC08g30090D

Coordinates

chrLK031795:-:918536..920673

Molecular Weight (calculated)

35681.3 Da

IEP (calculated)

5.718

GRAVY (calculated)

-0.185

Length

317 amino acids

Sequence
(BLAST)

001: MRFLARLYGP QCKGNDAVFL LTNPWELAGF VFNRELESRR SCCENNPEDF GTIWKLSGGY STGRFSLALY WMTFVAAEPK VESEEDGKVT VVTSELRRLA
101: ELMHGAMENP NTNVSHSLHV LAHKSDMYVF CLYSHNVAAK GKFIAFVSTD AETENPQTEL KAGIDLLCPV DEIFFYLYDR YKSLNVPSWG NCFISTSYDA
201: TAHFETTVAH LLNMYTLITK CSDILHYGLQ FASSMRNFCT ILIDYNEKDS KTHSGMVDNT IAIMSHPIPN TNDPCSVGPQ IRHVCLLLFV LPQRGPPRES
301: SSSHLFLSDA ETDNPQP

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.