CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY03088
CDY17621
CDY49093
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	CDX84035	AT1G14340.1	21798944
AT3G59920.1	CDX96860	AT1G14340.1	21798944
AT3G59920.1	CDY49093	AT1G14340.1	21798944
AT3G59920.1	CDY62016	AT1G14340.1	21798944
AT3G59920.1	CDY03088	AT2G01950.1	19000166
AT3G59920.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98399	Canola	cytosol	100.0	100.0
Bra003395.1-P	Field mustard	cytosol	99.77	99.77
CDY45775	Canola	cytosol	97.3	97.3
CDX89038	Canola	cytosol	97.3	97.3
AT3G59920.1	Thale cress	cytosol	96.17	96.17
CDY05962	Canola	cytosol	95.27	95.27
CDX71860	Canola	cytosol	85.59	92.91
CDX79782	Canola	cytosol	92.12	92.12
CDY17885	Canola	cytosol	92.12	92.12
HORVU1Hr1G064490.8	Barley	cytosol	86.49	85.91
KRH59137	Soybean	endoplasmic reticulum	85.81	85.81
TraesCS1A01G260900.1	Wheat	cytosol	85.81	85.62
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	85.81	85.62
TraesCS1B01G271700.1	Wheat	cytosol	85.81	85.62
TraesCS1D01G260900.1	Wheat	cytosol, golgi	85.81	85.62
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	85.59	85.59
Os05t0304400-01	Rice	plasma membrane	85.59	85.39
GSMUA_Achr7P23620_001	Banana	cytosol	84.68	85.07
Solyc12g017570.1.1	Tomato	plastid	84.91	84.91
TraesCS1A01G261000.1	Wheat	cytosol	85.14	84.75
KXG22017	Sorghum	cytosol	84.91	84.72
TraesCS1B01G271800.2	Wheat	cytosol, golgi	84.91	84.53
EES18242	Sorghum	cytosol	84.68	84.49
VIT_05s0094g01550.t01	Wine grape	cytosol	83.56	83.56
PGSC0003DMT400035649	Potato	cytosol	83.33	83.33
Solyc08g015860.2.1	Tomato	extracellular	82.88	82.88
Zm00001d010255_P001	Maize	cytosol, extracellular	84.46	82.6
GSMUA_Achr6P18380_001	Banana	cytosol	82.88	82.33
TraesCS5A01G041100.1	Wheat	cytosol	81.08	80.9
TraesCS5B01G042400.1	Wheat	cytosol	81.08	80.9
EER98346	Sorghum	cytosol	81.08	80.72
Os07t0271000-01	Rice	plasma membrane	81.08	80.72
TraesCS5D01G048100.1	Wheat	cytosol	80.63	80.45
Zm00001d010251_P003	Maize	cytosol	84.23	79.91
Zm00001d007315_P001	Maize	cytosol	31.98	79.78
HORVU1Hr1G064480.1	Barley	cytosol	79.28	78.92
CDX81131	Canola	cytosol	78.15	77.98
CDY56553	Canola	cytosol	77.93	77.75
CDY21587	Canola	cytosol	77.48	77.3
CDX69899	Canola	cytosol	54.05	76.19
GSMUA_Achr10P...	Banana	cytosol	75.45	75.45
Zm00001d005498_P001	Maize	cytosol	81.98	73.68
Zm00001d038200_P002	Maize	plastid	83.33	72.83
TraesCS1D01G261000.1	Wheat	golgi	85.36	72.61
CDY65664	Canola	cytosol	63.51	68.78
HORVU5Hr1G009840.1	Barley	cytosol	81.08	65.93
CDY42416	Canola	endoplasmic reticulum, extracellular	16.22	60.5
Zm00001d009786_P001	Maize	plastid	45.72	59.18
Zm00001d011867_P001	Maize	cytosol	46.62	56.56
CDY44805	Canola	cytosol	76.35	53.9
HORVU2Hr1G104740.2	Barley	mitochondrion	11.04	52.13
Zm00001d016318_P002	Maize	cytosol	32.88	51.59
HORVU7Hr1G075170.1	Barley	mitochondrion	12.39	50.0
CDY05966	Canola	cytosol	33.56	36.7
CDX71865	Canola	cytosol, mitochondrion	26.13	36.59
CDY23584	Canola	cytosol, nucleus, peroxisome	9.91	28.76
CDY24684	Canola	cytosol	25.45	19.96
CDY34947	Canola	cytosol, plastid, vacuole	23.87	19.34
CDY05274	Canola	plastid	24.1	19.07

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	GO:A0A078BUC7	EnsemblPlants:CDX67817
ProteinID:CDX67817	ProteinID:CDX67817.1	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092
GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264	GO:GO:0008150
GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	EnsemblPlantsGene:GSBRNA2T00099014001	InterPro:IPR036188	PFAM:PF00996
PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI	SUPFAM:SSF51905
UniParc:UPI0004EE1F50	SEG:seg	:	:	:	:

Description

BnaA07g18570D

Coordinates

chrLK031787:+:2379519..2382892

Molecular Weight (calculated)

49479.3 Da

IEP (calculated)

5.478

GRAVY (calculated)

-0.251

Length

444 amino acids

Sequence
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPV TPMEALKSPL MGIFEKRRAG KFFSYVQDYD EKDPKTHNGM DLTKVTTKEL IAKFGLDDNT IDFIGHAVAL HTNDQHLNQP
201: ALDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LCKPECKVEF DEEGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGTVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKAG IDLLGPVDEI FFDMYDRYEP VNEPALDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.