Factsheet for Zm00001d010255_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001
Zm00001d002122_P007
Zm00001d026425_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT3G59920.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT3G59920.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22017	Sorghum	cytosol	96.7	98.65
TraesCS1B01G271700.1	Wheat	cytosol	92.95	94.83
TraesCS1D01G260900.1	Wheat	cytosol, golgi	92.95	94.83
TraesCS1A01G260900.1	Wheat	cytosol	92.51	94.38
HORVU1Hr1G064490.8	Barley	cytosol	92.73	94.18
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	92.07	93.93
Os05t0304400-01	Rice	plasma membrane	92.07	93.93
TraesCS1B01G271800.2	Wheat	cytosol, golgi	90.31	91.93
TraesCS1A01G261000.1	Wheat	cytosol	90.09	91.7
GSMUA_Achr7P23620_001	Banana	cytosol	87.0	89.37
Zm00001d010251_P003	Maize	cytosol	91.19	88.46
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	85.46	87.39
Solyc12g017570.1.1	Tomato	plastid	85.24	87.16
KRH59137	Soybean	endoplasmic reticulum	85.24	87.16
GSMUA_Achr6P18380_001	Banana	cytosol	85.46	86.8
PGSC0003DMT400035649	Potato	cytosol	84.14	86.04
Solyc08g015860.2.1	Tomato	extracellular	83.92	85.81
HORVU1Hr1G064480.1	Barley	cytosol	83.92	85.43
CDY17885	Canola	cytosol	82.6	84.46
CDX98399	Canola	cytosol	82.6	84.46
CDX79782	Canola	cytosol	82.6	84.46
CDX67817	Canola	cytosol	82.6	84.46
Bra004805.1-P	Field mustard	cytosol	82.6	84.46
VIT_05s0094g01550.t01	Wine grape	cytosol	82.38	84.23
Bra003395.1-P	Field mustard	cytosol	82.38	84.23
CDY45775	Canola	cytosol	82.16	84.01
CDX89038	Canola	cytosol	81.94	83.78
Bra014523.1-P	Field mustard	cytosol	81.94	83.78
Zm00001d007315_P001	Maize	cytosol	32.82	83.71
AT2G44100.1	Thale cress	cytosol	81.94	83.6
AT3G59920.1	Thale cress	cytosol	81.72	83.56
Bra007493.1-P	Field mustard	cytosol	80.84	82.47
CDY05962	Canola	cytosol	80.4	82.21
CDX71860	Canola	cytosol	73.57	81.66
Zm00001d038200_P002	Maize	plastid	90.31	80.71
GSMUA_Achr10P...	Banana	cytosol	78.63	80.41
Zm00001d029596_P001	Maize	cytosol, extracellular	77.97	79.19
TraesCS1D01G261000.1	Wheat	golgi	90.09	78.35
Zm00001d005498_P001	Maize	cytosol	83.48	76.72
Zm00001d009786_P001	Maize	plastid	46.92	62.1
Zm00001d011867_P001	Maize	cytosol	49.34	61.2
Zm00001d016318_P002	Maize	cytosol	32.82	52.65
Zm00001d004622_P001	Maize	cytosol	5.73	36.11
Zm00001d050984_P001	Maize	cytosol, mitochondrion, peroxisome	5.51	34.72
Zm00001d009201_P001	Maize	cytosol	9.47	25.44
Zm00001d040408_P003	Maize	peroxisome	23.35	19.1
Zm00001d008269_P001	Maize	peroxisome	22.91	18.67

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	UniProt:A0A1D6FQ43	ProteinID:AQK93747.1
InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor	GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165	GO:GO:0007264
GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	GO:GO:0050790	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
SUPFAM:SSF51905	UniParc:UPI0008433282	EnsemblPlantsGene:Zm00001d010255	EnsemblPlants:Zm00001d010255_P001	EnsemblPlants:Zm00001d010255_T001	SEG:seg

Description

Guanosine nucleotide diphosphate dissociation inhibitor 2

Coordinates

chr8:-:106233472..106242362

Molecular Weight (calculated)

50865.0 Da

IEP (calculated)

6.646

GRAVY (calculated)

-0.253

Length

454 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ ARSYKSMILL WKRFRGEDKP PAHLGASRDY NVDMVPKFMM ANGTLVRTLI
101: HTDVTKYLSF KAVDGSYVFS KRKIHKVPAT DMEALKSPLM GLFEKRRARN FFVYVQNYNE ADPVTHQGLD LTRITTRELI LKHGLSDDTV DFIGHALALH
201: RDDRYLNEPA LDTVKRMKLY AESLARFQGG SPYIYPLYGL GELPQAFARL SAVYGGTYML NKPECKVEFD IEGKVCGVTS EGETAKCKKV VCDPSYLPSK
301: VRKIGKVARA IAIMSHPIPN TNESHSIQII LPQKQLGRKS DMYVFCCSYT HNVAPKGKFI AFVSAEAETD NPQSELKPGI DLLGQVDELF FDMYDRYKPV
401: NEPSLDNCFV SMSYDATTHF ETTVTDVLSM YTAITGKTVD LSVDLSAASA AEEY

Best Arabidopsis Sequence Match ( AT3G59920.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGVKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APEHLGASRD YNVDMMPKFM MGNGKLVRTL IHTDVTKYLS
101: FKAVDGSYVF VKGKVQKVPA TPMEALKSSL MGIFEKRRAG KFFSFVQEYD EKDPKTHDGM DLTRVTTKEL IAKYGLDGNT IDFIGHAVAL HTNDQHLDQP
201: AFDTVMRMKL YAESLARFQG TSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEGGKVIGVT SEGETAKCKK IVCDPSYLPN KVRKIGRVAR
301: AIAIMSHPIP NTNDSHSVQV IIPQKQLARK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELKPG TDLLGPVDEI FFDMYDRYEP VNEPELDNCF
401: ISTSYDATTH FETTVADVLN MYTLITGKQL DLSVDLSAAS AAEE

Arabidopsis Description

GDI2Guanosine nucleotide diphosphate dissociation inhibitor [Source:UniProtKB/TrEMBL;Acc:A0A178VFJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.