Factsheet for TraesCS1D01G260900.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi
Any Predictor:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

golgi: 23128297

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G521600.1
TraesCS2B01G551100.1
TraesCS2D01G523400.1
TraesCS3A01G099400.1
TraesCS3B01G115800.1
TraesCS3D01G099700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G59920.1	TraesCS2A01G521600.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2B01G551100.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS2D01G523400.1	AT1G14340.1	21798944
AT3G59920.1	TraesCS3A01G099400.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3B01G115800.1	AT2G01950.1	19000166
AT3G59920.1	TraesCS3D01G099700.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G271700.1	Wheat	cytosol	100.0	100.0
TraesCS1A01G260900.1	Wheat	cytosol	99.55	99.55
HORVU1Hr1G064490.8	Barley	cytosol	98.65	98.21
KXG22017	Sorghum	cytosol	95.28	95.28
Os05t0418000-01	Rice	cytosol, extracellular, plasma membrane, plastid	94.61	94.61
Os05t0304400-01	Rice	plasma membrane	94.61	94.61
Zm00001d010255_P001	Maize	cytosol, extracellular	94.83	92.95
GSMUA_Achr7P23620_001	Banana	cytosol	88.99	89.59
KRH43030	Soybean	cytosol, endoplasmic reticulum, nucleus	87.42	87.61
Solyc12g017570.1.1	Tomato	plastid	87.19	87.39
KRH59137	Soybean	endoplasmic reticulum	87.19	87.39
VIT_05s0094g01550.t01	Wine grape	cytosol	85.84	86.04
GSMUA_Achr6P18380_001	Banana	cytosol	86.29	85.91
CDX98399	Canola	cytosol	85.62	85.81
CDX67817	Canola	cytosol	85.62	85.81
Bra003395.1-P	Field mustard	cytosol	85.39	85.59
PGSC0003DMT400035649	Potato	cytosol	85.39	85.59
AT2G44100.1	Thale cress	cytosol	85.39	85.39
CDX79782	Canola	cytosol	84.94	85.14
AT3G59920.1	Thale cress	cytosol	84.94	85.14
Solyc08g015860.2.1	Tomato	extracellular	84.94	85.14
Bra004805.1-P	Field mustard	cytosol	84.94	85.14
CDY17885	Canola	cytosol	84.94	85.14
Bra014523.1-P	Field mustard	cytosol	84.49	84.68
CDX89038	Canola	cytosol	84.49	84.68
CDY45775	Canola	cytosol	84.27	84.46
Bra007493.1-P	Field mustard	cytosol	84.04	84.04
CDY05962	Canola	cytosol	83.37	83.56
TraesCS5D01G048100.1	Wheat	cytosol	83.15	83.15
CDX71860	Canola	cytosol	76.18	82.89
GSMUA_Achr10P...	Banana	cytosol	79.33	79.5
TraesCS4D01G206900.1	Wheat	cytosol	79.78	79.42
TraesCS1D01G261000.1	Wheat	golgi	92.36	78.74
TraesCS3D01G189700.1	Wheat	cytosol, nucleus, peroxisome	22.7	18.04

Protein Annotations

Gene3D:1.10.405.10	MapMan:22.8.4.2	Gene3D:3.30.519.10	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:GDP_dissociation_inhibitor
GO:GO:0003674	GO:GO:0005092	GO:GO:0005093	GO:GO:0006810	GO:GO:0007154	GO:GO:0007165
GO:GO:0007264	GO:GO:0008150	GO:GO:0009987	GO:GO:0015031	GO:GO:0030234	InterPro:IPR036188
PFAM:PF00996	PRINTS:PR00891	PRINTS:PR00892	PANTHER:PTHR11787	PANTHER:PTHR11787:SF11	InterPro:RabGDI
SUPFAM:SSF51905	SUPFAM:SSF54373	EnsemblPlantsGene:TraesCS1D01G260900	EnsemblPlants:TraesCS1D01G260900.1	SEG:seg	:

Description

No Description!

Coordinates

chr1D:+:355164801..355169948

Molecular Weight (calculated)

49708.4 Da

IEP (calculated)

5.949

GRAVY (calculated)

-0.277

Length

445 amino acids

Sequence
(BLAST)

001: MDEEYDVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GDSTSLNLNQ LWKKFRGEEK PPAHLGASRD YNVDMVPKFM MANGTLVRTL IHTDVTKYLS
101: FKAVDGSYVF SKGKIHKVPA TDMEALKSPL MGLFEKRRAR NFFIYVQDYN DADPRTHQGL DLTRMTTREL IAKHGLSDDT IDFIGHALAL HRDDRYLSEP
201: AIDTVKRMKL YSESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DMEGKVCGVT SEGETAKCKK VVCDPSYLAN KVRKIGKVAR
301: AIAIMSHPIP NANDSHSIQI ILPQKQLGRK SDMYVFCCSY THNVAPKGKF IAFVSAEAET DNPQSELKPG IDLLGPVDEL FFDMYDRYEP VNEPSLDNCF
401: VSSSYDATTH FETTVTDVLN MYTLITGKTV DLSVDLSAAS AAEEY

Best Arabidopsis Sequence Match ( AT2G44100.1 )
(BLAST)

001: MDEEYEVIVL GTGLKECILS GLLSVDGLKV LHMDRNDYYG GESTSLNLNQ LWKKFRGEEK APAHLGSSRD YNVDMMPKFM MANGKLVRVL IHTDVTKYLS
101: FKAVDGSYVF VQGKVQKVPA TPMEALKSPL MGIFEKRRAG KFFSYVQEYD EKDPKTHDGM DLRRVTTKDL IAKFGLKEDT IDFIGHAVAL HCNDNHLHQP
201: AYDTVMRMKL YAESLARFQG GSPYIYPLYG LGELPQAFAR LSAVYGGTYM LNKPECKVEF DEEGKVSGVT SEGETAKCKK VVCDPSYLTN KVRKIGRVAR
301: AIAIMSHPIP NTNDSQSVQV ILPQKQLGRK SDMYVFCCSY SHNVAPKGKF IAFVSTDAET DNPQTELQPG IDLLGPVDEL FFDIYDRYEP VNEPTLDNCF
401: ISTSYDATTH FDTTVVDVLN MYKLITGKEL DLSVDLNAAS AAEEE

Arabidopsis Description

GDI1Guanosine nucleotide diphosphate dissociation inhibitor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q96254]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.