Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G551100.1 | Wheat | nucleus | 99.59 | 99.59 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 98.36 | 98.36 |
| HORVU2Hr1G115210.1 | Barley | cytosol, nucleus, plastid | 98.77 | 96.02 |
| Zm00001d026425_P003 | Maize | cytosol | 81.56 | 81.56 |
| EES12950 | Sorghum | cytosol, nucleus, plastid | 79.92 | 79.92 |
| Zm00001d002122_P007 | Maize | cytosol, nucleus, plastid | 79.92 | 78.31 |
| Os04t0641400-02 | Rice | plastid | 85.25 | 72.47 |
| GSMUA_Achr3P19960_001 | Banana | cytosol | 60.25 | 60.74 |
| VIT_01s0026g01970.t01 | Wine grape | cytosol, nucleus, plastid | 55.74 | 55.28 |
| PGSC0003DMT400065786 | Potato | cytosol, nucleus, plastid | 51.64 | 51.43 |
| AT1G14340.1 | Thale cress | nucleus | 51.23 | 51.23 |
| CDY49093 | Canola | cytosol | 50.82 | 50.61 |
| CDY62016 | Canola | nucleus | 48.36 | 50.43 |
| Bra019660.1-P | Field mustard | cytosol | 50.41 | 50.41 |
| CDX96860 | Canola | nucleus | 49.18 | 49.18 |
| Bra016705.1-P | Field mustard | nucleus | 49.18 | 49.18 |
| CDX84035 | Canola | nucleus | 49.18 | 49.18 |
| PGSC0003DMT400017749 | Potato | cytosol | 49.59 | 47.45 |
| Solyc02g067390.2.1 | Tomato | cytosol | 49.59 | 47.45 |
| KRH01160 | Soybean | cytosol, nucleus, plastid | 48.77 | 46.67 |
| KRH40110 | Soybean | cytosol | 49.18 | 46.51 |
| KRH69305 | Soybean | nucleus | 53.69 | 45.02 |
| AT3G01210.1 | Thale cress | cytosol | 44.67 | 43.78 |
| CDX74287 | Canola | cytosol | 43.44 | 42.06 |
| Bra001017.1-P | Field mustard | cytosol, nucleus, plastid | 43.44 | 42.06 |
| CDX91958 | Canola | cytosol, nucleus, plastid | 43.03 | 41.67 |
| Solyc05g007200.2.1 | Tomato | mitochondrion | 51.64 | 41.31 |
| TraesCS7D01G027100.1 | Wheat | plastid | 34.43 | 31.58 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 35.25 | 31.05 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 34.84 | 29.93 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 31.97 | 24.76 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 32.79 | 20.94 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 |
| InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF7 |
| InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS2D01G523400 | EnsemblPlants:TraesCS2D01G523400.1 |
| InterPro:Vip1-like_RRM_plant | TIGR:cd12269 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:+:612341191..612343098
Molecular Weight (calculated)
26426.8 Da
IEP (calculated)
4.949
GRAVY (calculated)
-0.235
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGTGYTVEV TNLSSSASEN DLHEFFSFSG PIEHIDLIRS GGYGSTAYVT FKEPYALETA VLLSGATIVD QPVCISRWGQ PDEPCNFWDR PTWQVEEEIE
101: YRDYQSCQFN ATPQEALTVA QDVVKTMLSR GYILSKDALS RARAFDESHQ LSGSAAAKAA ELSRRLGLTD RVSAGVGAIR SVDETYHVTE TTKTVATATG
201: RTAVKVMNTI VTSSYFSAGA MMVSDALTRA AKAAENLAAH GRQN
101: YRDYQSCQFN ATPQEALTVA QDVVKTMLSR GYILSKDALS RARAFDESHQ LSGSAAAKAA ELSRRLGLTD RVSAGVGAIR SVDETYHVTE TTKTVATATG
201: RTAVKVMNTI VTSSYFSAGA MMVSDALTRA AKAAENLAAH GRQN
001: MDHQFGYGVE VTGLSPSVTH NDLIDFFSFS GTIQDIDIVR SGEQACTAYV MFKDSYSQET AVLLTGATIL DQRVCITRWG QHHEEFDFWN ATSRGFEDES
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
101: DSQHYAQRSE FNAGEAVTKA QEVVKIMLAT GFVLGKDALS KAKAFDESHG VSAAAVARVS QLEQRIGLTD KIFTGLEAVR MTDQRYHVSD TAKSAVFATG
201: RTAAAAATSV VNSSYFSSGA LWLSGALERA AKAASDLGTR GSRQ
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.