Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G049100.1 | Wheat | cytosol, nucleus, plastid | 99.3 | 99.3 |
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 98.94 | 98.94 |
| Os03t0713600-01 | Rice | cytosol | 87.32 | 87.32 |
| Zm00001d033766_P002 | Maize | cytosol, nucleus, plastid | 86.62 | 86.93 |
| Zm00001d013419_P001 | Maize | cytosol, nucleus, plastid | 84.51 | 84.81 |
| HORVU4Hr1G008120.3 | Barley | plastid | 97.18 | 84.66 |
| OQU91106 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 85.92 | 83.28 |
| VIT_01s0011g06050.t01 | Wine grape | cytosol | 62.32 | 62.32 |
| TraesCS7D01G027100.1 | Wheat | plastid | 51.41 | 54.89 |
| KRH49688 | Soybean | nucleus | 58.8 | 53.87 |
| KRH70369 | Soybean | cytosol | 58.45 | 53.55 |
| AT1G67950.2 | Thale cress | cytosol | 50.35 | 51.25 |
| CDY01872 | Canola | cytosol, plastid | 49.65 | 49.65 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 50.0 | 45.08 |
| GSMUA_Achr4P03340_001 | Banana | nucleus | 27.46 | 42.62 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 39.44 | 40.43 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 48.59 | 36.13 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 29.93 | 34.84 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G049200.1 | EnsemblPlantsGene:TraesCS4D01G049200 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR32343 |
| PANTHER:PTHR32343:SF11 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr4D:-:25377182..25380710
Molecular Weight (calculated)
30903.4 Da
IEP (calculated)
4.601
GRAVY (calculated)
-0.244
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVRTVKVGN ISLSASKREI TEFFSFSGDI EYVEMQSETD WSQLAYVTFK DSQGADTAVL LSGATIVDLS VIITPVENYQ LPPEARKQLP GENSPSAESA
101: VRKAEDVVSS MMAKGFVLSK DALNMARSFD ERHNIMSTAT ATVVSLDHQY GLSERISLGR AVVGSKVKEV DERYQVSELT RSALAAAEQK ASVAGSALMG
201: NQYVSAGASW LTSAFGMVSK AAGDMGSMAK DKVDKAEEER KAIMWEERNG LVSEYAKIHL DEHSSWEPAV LPVESMDEQK LQAV
101: VRKAEDVVSS MMAKGFVLSK DALNMARSFD ERHNIMSTAT ATVVSLDHQY GLSERISLGR AVVGSKVKEV DERYQVSELT RSALAAAEQK ASVAGSALMG
201: NQYVSAGASW LTSAFGMVSK AAGDMGSMAK DKVDKAEEER KAIMWEERNG LVSEYAKIHL DEHSSWEPAV LPVESMDEQK LQAV
001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG
101: AVNYQLPPEA LALDSEHSFN GFSVKKAEDV VNIMVGRGYA LGKDAMEKAK AFDDRHNLIS NASATIASLD DKMGLSEKLS IGTTVVNEKL RDIDERYQVR
201: EITKSALAAA EETAISARTA LMANPYVSSG ASWFSNAFGA VTKAVKEKVE NGGEGRKEII TLDPSSPKVP AVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.