Factsheet for TraesCS4A01G265800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G049100.1	Wheat	cytosol, nucleus, plastid	99.65	99.65
TraesCS4D01G049200.1	Wheat	cytosol, nucleus, plastid	98.94	98.94
Zm00001d033766_P002	Maize	cytosol, nucleus, plastid	87.68	87.99
Os03t0713600-01	Rice	cytosol	87.68	87.68
Zm00001d013419_P001	Maize	cytosol, nucleus, plastid	85.56	85.87
HORVU4Hr1G008120.3	Barley	plastid	97.54	84.97
OQU91106	Sorghum	cytosol, mitochondrion, nucleus, plastid	86.97	84.3
VIT_01s0011g06050.t01	Wine grape	cytosol	63.03	63.03
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	51.76	55.26
KRH49688	Soybean	nucleus	59.15	54.19
KRH70369	Soybean	cytosol	58.8	53.87
AT1G67950.2	Thale cress	cytosol	51.06	51.97
CDY01872	Canola	cytosol, plastid	50.35	50.35
TraesCS7A01G030900.2	Wheat	plastid	51.76	46.67
TraesCS2A01G445100.1	Wheat	extracellular	50.0	44.8
GSMUA_Achr4P03340_001	Banana	nucleus	27.46	42.62
TraesCS5A01G387800.1	Wheat	cytosol	40.49	42.28
TraesCS6A01G265600.1	Wheat	extracellular	49.65	35.52
TraesCS2A01G521600.1	Wheat	nucleus	29.58	34.43

Protein Annotations

EnsemblPlants:TraesCS4A01G265800.1	EnsemblPlantsGene:TraesCS4A01G265800	Gene3D:3.30.70.330	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	InterPro:RBD_domain_sf	InterPro:RRM_dom	PANTHER:PTHR32343
PANTHER:PTHR32343:SF11	PFAM:PF00076	PFscan:PS50102	SMART:SM00360	SUPFAM:SSF54928	MapMan:35.1

Description

No Description!

Coordinates

chr4A:+:577976925..577981919

Molecular Weight (calculated)

30870.4 Da

IEP (calculated)

4.601

GRAVY (calculated)

-0.237

Length

284 amino acids

Sequence
(BLAST)

001: MEVRTVKVGN ISLSASKREI TEFFSFSGDI EYVEMQSETD WSQLAYVTFK DSQGADTAVL LSGATIVDLS VIITPVENYQ LPPEAHKQLP GENSPSAESA
101: VRKAEDVVSS MMAKGFVLSK DALNMARSFD ERHNIMSTAT ATVVSLDHQY GLSEKISLGR AVVGSKVKEV DERYQVSELT RSALAAAEQK ASVAGSALMG
201: NQYVSAGASW LTSAFGMVTK AAGDMGSMAK DKVDKAEEER KAIMWEERNG LVSEYAKIHL DEHSSWEPAV LPVESMDEQK LQAV

Best Arabidopsis Sequence Match ( AT1G67950.3 )
(BLAST)

001: MSVTAAFIDS DQTQHNILMD SQSTVSGVKT VKISNVSLIV SKKDVKEFFS FSGDIQYVEM RSETQESQVA YVTFKDSQGA ETAMLLTGAV IADLRVSITP
101: AVNYQLPPEA LALDSQEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV
201: REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI ITLDPSSPKV PAVVPVKLG

Arabidopsis Description

RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.