Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 90.43 | 93.98 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 93.95 | 93.95 |
| Zm00001d054082_P001 | Maize | cytosol | 47.36 | 66.43 |
| Os04t0624800-01 | Rice | nucleus | 62.72 | 66.22 |
| OQU85574 | Sorghum | nucleus | 60.96 | 61.89 |
| Zm00001d046992_P001 | Maize | cytosol | 50.38 | 61.16 |
| Zm00001d051524_P002 | Maize | nucleus | 61.96 | 61.04 |
| CDY01476 | Canola | cytosol | 20.91 | 58.04 |
| Zm00001d046215_P001 | Maize | cytosol | 46.6 | 57.81 |
| KRH74377 | Soybean | endoplasmic reticulum | 40.05 | 56.99 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 39.55 | 56.68 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 39.55 | 56.47 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 40.05 | 56.38 |
| Zm00001d014267_P001 | Maize | nucleus | 59.7 | 56.16 |
| Solyc03g097110.2.1 | Tomato | nucleus | 39.29 | 56.12 |
| KRH39571 | Soybean | nucleus | 39.55 | 56.07 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 44.33 | 55.52 |
| PGSC0003DMT400038377 | Potato | cytosol | 39.04 | 55.16 |
| Solyc08g076530.2.1 | Tomato | plastid | 39.04 | 55.16 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 36.27 | 54.14 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 37.53 | 53.6 |
| CDY01477 | Canola | cytosol | 39.8 | 52.15 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 39.55 | 51.48 |
| CDX78795 | Canola | nucleus | 39.04 | 51.16 |
| Bra040177.1-P | Field mustard | nucleus | 38.79 | 50.99 |
| Bra012646.1-P | Field mustard | nucleus | 40.05 | 50.96 |
| AT5G46870.1 | Thale cress | nucleus | 37.78 | 50.85 |
| CDY60787 | Canola | nucleus | 38.79 | 50.83 |
| CDX90453 | Canola | cytosol | 39.55 | 50.81 |
| TraesCS4A01G265800.1 | Wheat | cytosol, nucleus, plastid | 35.52 | 49.65 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 39.04 | 49.52 |
| Bra023585.1-P | Field mustard | nucleus | 31.23 | 49.01 |
| AT5G16840.2 | Thale cress | nucleus | 31.74 | 48.46 |
| CDX69415 | Canola | cytosol | 31.49 | 48.08 |
| CDX78713 | Canola | cytosol | 31.49 | 47.89 |
| Bra006373.1-P | Field mustard | cytosol | 31.49 | 47.89 |
| Bra008589.1-P | Field mustard | cytosol | 31.49 | 47.71 |
| KRH24024 | Soybean | nucleus | 35.01 | 47.6 |
| CDX70721 | Canola | cytosol | 30.98 | 47.13 |
| CDY01473 | Canola | nucleus | 23.17 | 46.46 |
| TraesCS7A01G030900.2 | Wheat | plastid | 36.27 | 45.71 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 38.29 | 45.65 |
| Bra024988.1-P | Field mustard | vacuole | 38.29 | 45.65 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 38.29 | 45.37 |
| CDX90455 | Canola | cytosol | 23.17 | 44.23 |
| Bra012647.1-P | Field mustard | cytosol | 23.17 | 44.23 |
| PGSC0003DMT400069547 | Potato | nucleus | 36.78 | 42.94 |
| CDY16974 | Canola | plastid | 31.74 | 39.62 |
| Solyc06g072770.2.1 | Tomato | nucleus | 36.27 | 39.56 |
| CDX85485 | Canola | plastid | 31.23 | 39.37 |
| TraesCS5A01G387800.1 | Wheat | cytosol | 26.7 | 38.97 |
| TraesCS2A01G521600.1 | Wheat | nucleus | 20.65 | 33.61 |
| CDY38083 | Canola | nucleus | 30.73 | 29.12 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G265600.1 | EnsemblPlantsGene:TraesCS6A01G265600 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44136 |
| PANTHER:PTHR44136:SF4 | PFAM:PF00076 | PFscan:PS50102 | SMART:SM00360 | SUPFAM:SSF54928 | MapMan:35.1 |
Description
No Description!
Coordinates
chr6A:-:490490615..490492065
Molecular Weight (calculated)
42995.3 Da
IEP (calculated)
4.586
GRAVY (calculated)
-0.522
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MLINSFMVIP FFKTNMFSTV KVHNVSLQAS ERVIKEFFSF SGDIVHVEMQ SGDGRSQFAY ITFRDEQGAE RAMLLTGATI VDMAVIITPA TNYQLPAAVL
101: DDLESKSPSS IEAALRKAED VAGSMLAKGF ILGKDAVEKA KTFDETHQLT STASAKVSSI DKSLGLSEKI STGTIVVNEK MKEMDEKYQV AEKTKSALVA
201: AEQTVSTAGS KFMRHRYILT GAAWVTGAYS KVATTATEAY NKERAMAEQE DELVKSSEEA GQESKCQEGD PAKVSVPENT ETGQMADQEG ECPKTNKPED
301: TETGKDEQKS QDGDIAKAQT QENTEITAEE HKHQEAELPK ASTPESLLMA EQTEQEHKQP VTEVANSNIP SSPVTIAVCM ATDDAKSSNS PKKPGPA
101: DDLESKSPSS IEAALRKAED VAGSMLAKGF ILGKDAVEKA KTFDETHQLT STASAKVSSI DKSLGLSEKI STGTIVVNEK MKEMDEKYQV AEKTKSALVA
201: AEQTVSTAGS KFMRHRYILT GAAWVTGAYS KVATTATEAY NKERAMAEQE DELVKSSEEA GQESKCQEGD PAKVSVPENT ETGQMADQEG ECPKTNKPED
301: TETGKDEQKS QDGDIAKAQT QENTEITAEE HKHQEAELPK ASTPESLLMA EQTEQEHKQP VTEVANSNIP SSPVTIAVCM ATDDAKSSNS PKKPGPA
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.