Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G185700.1 | |
| TraesCS3B01G215300.1 | |
| TraesCS3D01G189700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | TraesCS3A01G185700.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3B01G215300.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3D01G189700.1 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G426300.1 | Wheat | cytosol | 99.54 | 99.54 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 99.54 | 99.54 |
| EES19950 | Sorghum | cytosol | 95.83 | 95.83 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 94.44 | 94.44 |
| Os05t0564400-02 | Rice | plasma membrane | 93.98 | 93.55 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 93.52 | 93.52 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 93.52 | 93.52 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 93.52 | 93.52 |
| AT5G60860.1 | Thale cress | cytosol | 91.2 | 90.78 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 89.81 | 89.4 |
| PGSC0003DMT400024319 | Potato | cytosol | 89.81 | 89.4 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 89.81 | 89.4 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 89.35 | 88.94 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 88.89 | 88.48 |
| KRH55839 | Soybean | endoplasmic reticulum | 88.89 | 88.48 |
| KRH25681 | Soybean | cytosol | 88.89 | 88.48 |
| AT3G15060.1 | Thale cress | cytosol | 88.43 | 88.02 |
| KRH50137 | Soybean | cytosol, mitochondrion | 87.96 | 87.56 |
| Bra001581.1-P | Field mustard | cytosol | 87.04 | 86.24 |
| PGSC0003DMT400020208 | Potato | cytosol | 86.57 | 86.18 |
| KRH30863 | Soybean | cytosol | 86.57 | 86.18 |
| CDX82451 | Canola | cytosol | 86.57 | 85.78 |
| CDX75804 | Canola | cytosol | 86.57 | 85.78 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 86.11 | 85.71 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 85.65 | 85.25 |
| CDY30818 | Canola | cytosol | 85.65 | 84.86 |
| Bra032914.1-P | Field mustard | cytosol | 85.65 | 84.86 |
| CDY34094 | Canola | cytosol | 85.65 | 84.86 |
| Solyc12g014080.1.1 | Tomato | cytosol | 85.19 | 84.79 |
| Bra010860.1-P | Field mustard | cytosol | 84.26 | 84.65 |
| CDX90160 | Canola | cytosol | 84.26 | 84.65 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 84.72 | 84.33 |
| Bra021589.1-P | Field mustard | cytosol | 84.72 | 83.94 |
| Bra030105.1-P | Field mustard | cytosol | 84.72 | 83.94 |
| CDY20100 | Canola | cytosol | 84.72 | 83.94 |
| CDX94631 | Canola | cytosol | 84.72 | 83.94 |
| CDY35757 | Canola | cytosol | 84.72 | 83.94 |
| AT2G33870.1 | Thale cress | cytosol | 84.26 | 83.49 |
| AT1G28550.1 | Thale cress | cytosol | 84.26 | 83.49 |
| CDY15659 | Canola | cytosol | 84.26 | 83.49 |
| PGSC0003DMT400058784 | Potato | cytosol | 82.87 | 83.26 |
| CDX79548 | Canola | cytosol | 75.93 | 83.25 |
| PGSC0003DMT400033395 | Potato | cytosol | 82.87 | 82.87 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 82.87 | 82.87 |
| Solyc10g008840.2.1 | Tomato | cytosol | 82.41 | 82.79 |
| Bra022959.1-P | Field mustard | cytosol | 83.33 | 82.57 |
| Solyc03g006270.2.1 | Tomato | cytosol | 82.41 | 82.41 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 80.56 | 79.82 |
| AT4G18430.1 | Thale cress | cytosol | 80.09 | 79.72 |
| TraesCS7A01G354400.1 | Wheat | golgi | 80.09 | 79.72 |
| CDY55638 | Canola | cytosol | 79.63 | 79.26 |
| CDY01540 | Canola | cytosol | 79.63 | 79.26 |
| CDX76522 | Canola | cytosol | 79.17 | 78.8 |
| Bra012597.1-P | Field mustard | cytosol | 79.17 | 78.8 |
| Bra021009.1-P | Field mustard | cytosol | 78.7 | 78.34 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 68.98 | 77.6 |
| KRH27001 | Soybean | cytosol, endoplasmic reticulum | 77.31 | 76.61 |
| KRH22324 | Soybean | cytosol, endoplasmic reticulum | 76.85 | 76.15 |
| TraesCS3A01G289600.1 | Wheat | cytosol | 73.61 | 71.95 |
| CDY60884 | Canola | cytosol | 73.61 | 71.3 |
| TraesCS3A01G364100.1 | Wheat | cytosol | 67.13 | 67.13 |
| TraesCS5A01G485100.1 | Wheat | cytosol, golgi | 64.81 | 65.12 |
| TraesCS1A01G015400.1 | Wheat | cytosol | 67.13 | 65.02 |
| TraesCS4A01G343500.1 | Wheat | cytosol | 65.74 | 63.11 |
| TraesCS1A01G131500.2 | Wheat | cytosol | 60.19 | 60.19 |
| TraesCS5A01G176000.1 | Wheat | cytosol | 60.65 | 57.96 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 67.13 | 57.31 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 54.17 | 47.37 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF346 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS1A01G398400 |
| EnsemblPlants:TraesCS1A01G398400.1 | TIGR:cd01868 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:563684680..563685866
Molecular Weight (calculated)
24113.5 Da
IEP (calculated)
5.741
GRAVY (calculated)
-0.299
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRAEDDYD YLFKVVLIGD SGVGKSNLLT RFTRNEFSLE SKSTIGVEFA TRSIHVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLREL KDHTDANIVI MLVGNKADLR HLRAVPSEDA KAFAERENTF FMETSALEAM NVEDAFTEVL SQIYRVVSKK ALDIGDDPAA PPKGKTINVG
201: SKDDVSAVKK SNCCSS
101: ENVERWLREL KDHTDANIVI MLVGNKADLR HLRAVPSEDA KAFAERENTF FMETSALEAM NVEDAFTEVL SQIYRVVSKK ALDIGDDPAA PPKGKTINVG
201: SKDDVSAVKK SNCCSS
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.