Factsheet for VIT_19s0014g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0003g00550.t01	Wine grape	cytosol	95.39	95.39
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	92.17	92.59
TraesCS5A01G184100.1	Wheat	golgi, plastid	92.17	92.59
TraesCS5B01G182200.1	Wheat	cytosol	92.17	92.59
TraesCS5D01G188900.1	Wheat	cytosol	92.17	92.59
TraesCS7A01G285200.1	Wheat	cytosol	91.71	92.13
TraesCS7D01G289000.1	Wheat	cytosol	91.71	92.13
TraesCS7B01G200600.1	Wheat	cytosol	91.24	91.67
OQU89311	Sorghum	cytosol	91.24	91.67
Os09t0327100-01	Rice	plasma membrane	91.24	91.67
Os05t0564400-02	Rice	plasma membrane	90.78	90.78
EES19950	Sorghum	cytosol	89.4	89.81
GSMUA_Achr3P15540_001	Banana	cytosol	88.94	89.35
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	88.94	89.35
GSMUA_Achr8P27180_001	Banana	cytosol	88.48	88.89
TraesCS1A01G398400.1	Wheat	cytosol	88.48	88.89
TraesCS1B01G426300.1	Wheat	cytosol	88.02	88.43
TraesCS1D01G405900.1	Wheat	cytosol	88.02	88.43
Solyc12g014080.1.1	Tomato	cytosol	88.02	88.02
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	87.56	87.56
GSMUA_Achr5P09130_001	Banana	cytosol	87.56	87.56
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	87.1	87.5
VIT_12s0028g02650.t01	Wine grape	cytosol	87.1	87.5
GSMUA_Achr1P11940_001	Banana	cytosol	85.71	86.11
GSMUA_Achr4P02760_001	Banana	cytosol	73.27	83.68
GSMUA_Achr1P04780_001	Banana	cytosol	76.5	83.0
GSMUA_Achr7P14790_001	Banana	cytosol	70.05	79.17
TraesCS3A01G247000.1	Wheat	cytosol	78.34	77.98
TraesCS3D01G244500.1	Wheat	cytosol	78.34	77.98
Zm00001d043935_P001	Maize	cytosol	76.96	75.91
OQU87300	Sorghum	cytosol	76.04	75.34
VIT_12s0035g01140.t01	Wine grape	extracellular	70.05	70.7
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	69.12	69.12
VIT_19s0014g01160.t01	Wine grape	extracellular	76.96	66.27
VIT_13s0019g02470.t01	Wine grape	cytosol	69.12	62.24
VIT_13s0064g01300.t01	Wine grape	cytosol	60.83	58.41
VIT_08s0007g07800.t01	Wine grape	cytosol	59.91	58.3
GSMUA_Achr7P10970_001	Banana	cytosol	66.82	57.31
VIT_07s0191g00030.t01	Wine grape	cytosol	58.53	56.19
VIT_15s0048g03000.t01	Wine grape	cytosol	58.06	52.72
TraesCS3B01G272300.1	Wheat	cytosol	78.34	49.13

Protein Annotations

EntrezGene:100265827	wikigene:100265827	EntrezGene:104877501	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:AM433288
ProteinID:CAN75965	ProteinID:CAN75965.1	ProteinID:CCB46285	ProteinID:CCB46285.1	UniProt:F6H1Y9	EMBL:FN595229
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787
EntrezGene:LOC100265827	wikigene:LOC100265827	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00015C8109	ArrayExpress:VIT_19s0014g01820
EnsemblPlantsGene:VIT_19s0014g01820	EnsemblPlants:VIT_19s0014g01820.t01	RefSeq:XP_002282900	RefSeq:XP_002282900.2	RefSeq:XP_010644154.1	SEG:seg

Description

No Description!

Coordinates

chr19:+:2014925..2018067

Molecular Weight (calculated)

24216.6 Da

IEP (calculated)

5.728

GRAVY (calculated)

-0.245

Length

217 amino acids

Sequence
(BLAST)

001: MAAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDSHIV IMLVGNKGDL RHLRAVSIDD AKAFAERENT FFMETSALES MNVENAFTEV LTQIYQVVSR KALDIGDDPA ALPKGQTINV
201: GTKDDVSAVK KAGCCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.