Factsheet for GSMUA_Achr4P02760_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P04780_001	Banana	cytosol	83.16	79.0
VIT_10s0003g00550.t01	Wine grape	cytosol	85.26	74.65
GSMUA_Achr4P02540_001	Banana	cytosol	74.74	73.96
Solyc07g053480.2.1	Tomato	cytosol, plastid	84.21	73.73
PGSC0003DMT400024319	Potato	cytosol	84.21	73.73
VIT_19s0014g01820.t01	Wine grape	cytosol	83.68	73.27
Solyc12g014080.1.1	Tomato	cytosol	83.68	73.27
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	83.68	73.27
PGSC0003DMT400020208	Potato	cytosol	83.68	73.27
KRH20359	Soybean	cytosol, endoplasmic reticulum	83.68	73.27
GSMUA_Achr5P09130_001	Banana	cytosol	83.68	73.27
KRH50137	Soybean	cytosol, mitochondrion	83.16	72.81
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	83.16	72.81
AT5G60860.1	Thale cress	cytosol	83.16	72.81
GSMUA_Achr3P15540_001	Banana	cytosol	82.63	72.69
GSMUA_Achr1P11940_001	Banana	cytosol	82.63	72.69
Bra032914.1-P	Field mustard	cytosol	83.16	72.48
CDY34094	Canola	cytosol	83.16	72.48
CDY30818	Canola	cytosol	83.16	72.48
GSMUA_Achr7P14790_001	Banana	cytosol	73.16	72.4
KRH55839	Soybean	endoplasmic reticulum	82.63	72.35
KRH25681	Soybean	cytosol	82.63	72.35
VIT_12s0028g02650.t01	Wine grape	cytosol	82.11	72.22
Bra010860.1-P	Field mustard	cytosol	81.58	72.09
CDX90160	Canola	cytosol	81.58	72.09
KRH30863	Soybean	cytosol	82.11	71.89
CDY15659	Canola	cytosol	82.11	71.56
CDX94631	Canola	cytosol	82.11	71.56
CDY35757	Canola	cytosol	82.11	71.56
Bra030105.1-P	Field mustard	cytosol	82.11	71.56
AT1G28550.1	Thale cress	cytosol	81.58	71.1
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	81.05	70.97
AT3G15060.1	Thale cress	cytosol	80.53	70.51
Bra001581.1-P	Field mustard	cytosol	80.53	70.18
GSMUA_Achr8P27180_001	Banana	cytosol	79.47	69.91
GSMUA_Achr6P31790_001	Banana	cytosol	61.05	69.88
CDX82451	Canola	cytosol	80.0	69.72
AT2G33870.1	Thale cress	cytosol	79.47	69.27
CDX79548	Canola	cytosol	71.58	69.04
PGSC0003DMT400033395	Potato	cytosol	78.42	68.98
Solyc10g008840.2.1	Tomato	cytosol	77.89	68.84
PGSC0003DMT400058784	Potato	cytosol	77.89	68.84
CDX75804	Canola	cytosol	78.95	68.81
Bra022959.1-P	Field mustard	cytosol	78.95	68.81
Solyc03g006270.2.1	Tomato	cytosol	77.89	68.52
CDY01540	Canola	cytosol	76.32	66.82
CDY55638	Canola	cytosol	76.32	66.82
CDY20100	Canola	cytosol	76.32	66.51
Bra021589.1-P	Field mustard	cytosol	76.32	66.51
AT4G18430.1	Thale cress	cytosol	75.79	66.36
Bra012597.1-P	Field mustard	cytosol	75.79	66.36
CDX76522	Canola	cytosol	75.26	65.9
KRH27001	Soybean	cytosol, endoplasmic reticulum	75.26	65.6
Bra021009.1-P	Field mustard	cytosol	74.74	65.44
KRH22324	Soybean	cytosol, endoplasmic reticulum	74.74	65.14
GSMUA_Achr9P05610_001	Banana	cytosol	72.63	64.19
GSMUA_Achr3P15680_001	Banana	plasma membrane	73.16	64.06
GSMUA_Achr8P27780_001	Banana	cytosol	57.89	61.11
CDY60884	Canola	cytosol	69.47	59.19
GSMUA_Achr6P14930_001	Banana	cytosol	48.95	54.39
GSMUA_Achr9P03770_001	Banana	cytosol	53.16	54.01
GSMUA_Achr7P10970_001	Banana	cytosol	71.05	53.36
GSMUA_Achr5P28770_001	Banana	cytosol	60.0	52.53
GSMUA_Achr7P26890_001	Banana	cytosol	51.58	52.41
GSMUA_Achr2P05630_001	Banana	cytosol	58.95	52.09
GSMUA_Achr6P18430_001	Banana	cytosol	61.58	52.0
GSMUA_Achr3P11810_001	Banana	cytosol	61.05	51.56
GSMUA_Achr6P28910_001	Banana	cytosol	58.42	51.15
GSMUA_Achr8P18090_001	Banana	cytosol	57.89	50.46
GSMUA_Achr1P16540_001	Banana	cytosol	53.16	50.25
GSMUA_Achr1P19620_001	Banana	cytosol	60.53	49.78
GSMUA_Achr8P02230_001	Banana	plasma membrane	56.32	49.54
GSMUA_Achr3P01690_001	Banana	cytosol	56.84	49.32
GSMUA_Achr3P21290_001	Banana	cytosol	55.79	48.4
GSMUA_Achr3P13850_001	Banana	cytosol	55.26	44.87
GSMUA_Achr9P00860_001	Banana	cytosol	54.21	44.78

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr4G02760_001	EnsemblPlants:GSMUA_Achr4P02760_001	EnsemblPlants:GSMUA_Achr4T02760_001
UniProt:M0SKJ3	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF842	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002958D2F	SEG:seg	:

Description

Ras-related protein Rab11B [Source:GMGC_GENE;Acc:GSMUA_Achr4G02760_001]

Coordinates

chr4:-:2314928..2318923

Molecular Weight (calculated)

21283.1 Da

IEP (calculated)

5.860

GRAVY (calculated)

-0.297

Length

190 amino acids

Sequence
(BLAST)

001: MTYRADDDYD YLFKVSKATI GVEFATRSIR IDGKVVKAQI WDTAGQERYR AITSAYYRGA VGALVVYDIT RNVTFENVER WLKELRDHTD TSIVIMLVGN
101: KADVRHLRAA TTEDATAFAE RENTFFMETS ALESTNVEAA FNEVLTQIYQ VVSRKALEAG NDSTSLPKGQ TINVGKDDVS AIKKVRCCST

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.