Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400003853 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | PGSC0003DMT400003853 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g008840.2.1 | Tomato | cytosol | 98.6 | 98.6 |
| PGSC0003DMT400033395 | Potato | cytosol | 93.02 | 92.59 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 86.51 | 85.71 |
| KRH50137 | Soybean | cytosol, mitochondrion | 86.05 | 85.25 |
| Bra010860.1-P | Field mustard | cytosol | 85.12 | 85.12 |
| CDX90160 | Canola | cytosol | 85.12 | 85.12 |
| AT5G60860.1 | Thale cress | cytosol | 85.58 | 84.79 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 85.58 | 84.79 |
| PGSC0003DMT400024319 | Potato | cytosol | 85.58 | 84.79 |
| TraesCS5B01G182200.1 | Wheat | cytosol | 85.12 | 84.72 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 85.12 | 84.72 |
| TraesCS5D01G188900.1 | Wheat | cytosol | 85.12 | 84.72 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 85.12 | 84.72 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 85.12 | 84.33 |
| Os09t0327100-01 | Rice | plasma membrane | 84.65 | 84.26 |
| OQU89311 | Sorghum | cytosol | 84.65 | 84.26 |
| CDY30818 | Canola | cytosol | 85.12 | 83.94 |
| Bra032914.1-P | Field mustard | cytosol | 85.12 | 83.94 |
| CDY34094 | Canola | cytosol | 85.12 | 83.94 |
| CDY35757 | Canola | cytosol | 85.12 | 83.94 |
| KRH30863 | Soybean | cytosol | 84.65 | 83.87 |
| CDX79548 | Canola | cytosol | 76.74 | 83.76 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 84.19 | 83.41 |
| EES19950 | Sorghum | cytosol | 83.72 | 83.33 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 83.72 | 83.33 |
| AT2G33870.1 | Thale cress | cytosol | 84.19 | 83.03 |
| Bra030105.1-P | Field mustard | cytosol | 84.19 | 83.03 |
| CDY15659 | Canola | cytosol | 84.19 | 83.03 |
| CDX94631 | Canola | cytosol | 84.19 | 83.03 |
| AT3G15060.1 | Thale cress | cytosol | 83.72 | 82.95 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 83.26 | 82.87 |
| GSMUA_Achr3P15540_001 | Banana | cytosol | 83.26 | 82.87 |
| TraesCS7B01G200600.1 | Wheat | cytosol | 83.26 | 82.87 |
| Bra022959.1-P | Field mustard | cytosol | 83.72 | 82.57 |
| PGSC0003DMT400020208 | Potato | cytosol | 83.26 | 82.49 |
| TraesCS1B01G426300.1 | Wheat | cytosol | 82.79 | 82.41 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 82.79 | 82.41 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 82.79 | 82.41 |
| TraesCS7D01G289000.1 | Wheat | cytosol | 82.79 | 82.41 |
| AT1G28550.1 | Thale cress | cytosol | 83.26 | 82.11 |
| Os05t0564400-02 | Rice | plasma membrane | 82.79 | 82.03 |
| GSMUA_Achr8P27180_001 | Banana | cytosol | 82.33 | 81.94 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 82.33 | 81.94 |
| GSMUA_Achr1P11940_001 | Banana | cytosol | 81.86 | 81.48 |
| CDY20100 | Canola | cytosol | 81.86 | 80.73 |
| Bra021589.1-P | Field mustard | cytosol | 81.86 | 80.73 |
| Bra001581.1-P | Field mustard | cytosol | 81.4 | 80.28 |
| AT4G18430.1 | Thale cress | cytosol | 80.93 | 80.18 |
| CDX75804 | Canola | cytosol | 80.93 | 79.82 |
| CDX82451 | Canola | cytosol | 80.93 | 79.82 |
| GSMUA_Achr5P09130_001 | Banana | cytosol | 80.0 | 79.26 |
| CDY55638 | Canola | cytosol | 80.0 | 79.26 |
| CDY01540 | Canola | cytosol | 80.0 | 79.26 |
| Bra012597.1-P | Field mustard | cytosol | 79.53 | 78.8 |
| CDX76522 | Canola | cytosol | 79.53 | 78.8 |
| Bra021009.1-P | Field mustard | cytosol | 79.07 | 78.34 |
| GSMUA_Achr4P02760_001 | Banana | cytosol | 68.84 | 77.89 |
| GSMUA_Achr1P04780_001 | Banana | cytosol | 70.7 | 76.0 |
| TraesCS3D01G244500.1 | Wheat | cytosol | 76.74 | 75.69 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 76.74 | 75.69 |
| PGSC0003DMT400073077 | Potato | cytosol | 75.81 | 75.12 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 66.51 | 74.48 |
| OQU87300 | Sorghum | cytosol | 73.95 | 72.6 |
| Zm00001d043935_P001 | Maize | cytosol | 73.95 | 72.27 |
| CDY60884 | Canola | cytosol | 74.88 | 72.2 |
| PGSC0003DMT400053686 | Potato | cytosol | 68.37 | 68.06 |
| PGSC0003DMT400064102 | Potato | cytosol | 66.98 | 67.29 |
| PGSC0003DMT400078200 | Potato | cytosol | 66.98 | 66.98 |
| PGSC0003DMT400069776 | Potato | cytosol | 65.58 | 65.58 |
| PGSC0003DMT400055848 | Potato | cytosol | 64.65 | 64.95 |
| PGSC0003DMT400065028 | Potato | cytosol | 62.33 | 59.29 |
| PGSC0003DMT400041813 | Potato | cytosol | 60.47 | 58.04 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 67.91 | 57.71 |
| PGSC0003DMT400033664 | Potato | cytosol | 60.0 | 57.59 |
| PGSC0003DMT400021064 | Potato | cytosol | 60.47 | 57.52 |
| PGSC0003DMT400060649 | Potato | cytosol | 58.6 | 56.76 |
| PGSC0003DMT400045950 | Potato | cytosol | 65.58 | 55.29 |
| PGSC0003DMT400000356 | Potato | cytosol | 56.28 | 50.21 |
| TraesCS3B01G272300.1 | Wheat | cytosol | 76.74 | 47.69 |
Protein Annotations
| EntrezGene:102588749 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M1C3B5 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | EnsemblPlantsGene:PGSC0003DMG400022839 | PGSC:PGSC0003DMG400022839 | EnsemblPlants:PGSC0003DMT400058784 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF842 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000294C769 | RefSeq:XP_006361051.1 |
Description
GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022839]
Coordinates
chr10:+:4487441..4490182
Molecular Weight (calculated)
23877.2 Da
IEP (calculated)
6.362
GRAVY (calculated)
-0.298
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTYRSEEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSQ QSKSTIGVEF ATRTIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITRHVT
101: FENVARWLKE LRDHTDQNIV VMLVGNKADL RHLRAVPTDD SKGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSK KALDAGDDPA SLPAGQTIHI
201: GNDVSAVKKG GCCSG
101: FENVARWLKE LRDHTDQNIV VMLVGNKADL RHLRAVPTDD SKGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSK KALDAGDDPA SLPAGQTIHI
201: GNDVSAVKKG GCCSG
001: MGTYKAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRSTIGVEF ATRSIQVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANTV IMLVGNKADL NHLRAISTEE VKDFAERENT FFMETSALEA INVENAFTEV LTQIYRVVSK KALDAGDDPT TALPKGQMIN
201: VGSRDDVSAV KKSGCCAT
101: FENVERWLKE LRDHTDANTV IMLVGNKADL NHLRAISTEE VKDFAERENT FFMETSALEA INVENAFTEV LTQIYRVVSK KALDAGDDPT TALPKGQMIN
201: VGSRDDVSAV KKSGCCAT
Arabidopsis Description
RABA1HArRABA1h [Source:UniProtKB/TrEMBL;Acc:A0A178W1D1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.