Factsheet for Bra030105.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX94631	Canola	cytosol	100.0	100.0
CDY15659	Canola	cytosol	99.54	99.54
Bra010860.1-P	Field mustard	cytosol	97.71	99.07
Bra032914.1-P	Field mustard	cytosol	98.17	98.17
AT1G28550.1	Thale cress	cytosol	97.71	97.71
Bra022959.1-P	Field mustard	cytosol	90.83	90.83
KRH20359	Soybean	cytosol, endoplasmic reticulum	88.99	89.4
KRH50137	Soybean	cytosol, mitochondrion	87.61	88.02
TraesCS5A01G184100.1	Wheat	golgi, plastid	87.16	87.96
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	87.16	87.96
VIT_10s0003g00550.t01	Wine grape	cytosol	87.16	87.56
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	86.7	87.1
KRH30863	Soybean	cytosol	86.7	87.1
TraesCS5B01G182200.1	Wheat	cytosol	86.24	87.04
TraesCS5D01G188900.1	Wheat	cytosol	86.24	87.04
Os09t0327100-01	Rice	plasma membrane	85.78	86.57
OQU89311	Sorghum	cytosol	85.78	86.57
TraesCS7B01G200600.1	Wheat	cytosol	84.86	85.65
EES19950	Sorghum	cytosol	84.86	85.65
Os05t0564400-02	Rice	plasma membrane	84.86	85.25
TraesCS7D01G289000.1	Wheat	cytosol	84.4	85.19
TraesCS7A01G285200.1	Wheat	cytosol	84.4	85.19
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	83.94	84.72
TraesCS1A01G398400.1	Wheat	cytosol	83.94	84.72
TraesCS1B01G426300.1	Wheat	cytosol	83.49	84.26
TraesCS1D01G405900.1	Wheat	cytosol	83.49	84.26
PGSC0003DMT400058784	Potato	cytosol	83.03	84.19
Solyc10g008840.2.1	Tomato	cytosol	83.03	84.19
PGSC0003DMT400033395	Potato	cytosol	83.03	83.8
Bra001581.1-P	Field mustard	cytosol	83.49	83.49
GSMUA_Achr3P15540_001	Banana	cytosol	82.57	83.33
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	82.57	83.33
Solyc03g006270.2.1	Tomato	cytosol	82.57	83.33
GSMUA_Achr4P02760_001	Banana	cytosol	71.56	82.11
GSMUA_Achr5P09130_001	Banana	cytosol	81.19	81.57
GSMUA_Achr1P11940_001	Banana	cytosol	80.73	81.48
GSMUA_Achr8P27180_001	Banana	cytosol	80.73	81.48
Bra021589.1-P	Field mustard	cytosol	80.73	80.73
GSMUA_Achr1P04780_001	Banana	cytosol	72.48	79.0
TraesCS3A01G247000.1	Wheat	cytosol	78.44	78.44
TraesCS3D01G244500.1	Wheat	cytosol	78.44	78.44
Bra021009.1-P	Field mustard	cytosol	77.52	77.88
Bra012597.1-P	Field mustard	cytosol	77.52	77.88
GSMUA_Achr7P14790_001	Banana	cytosol	66.06	75.0
OQU87300	Sorghum	cytosol	72.48	72.15
Zm00001d043935_P001	Maize	cytosol	72.48	71.82
Bra026016.1-P	Field mustard	cytosol	70.18	70.83
Bra032424.1-P	Field mustard	cytosol	69.72	68.16
Bra002589.1-P	Field mustard	cytosol	66.97	67.28
Bra020006.1-P	Field mustard	cytosol	66.06	66.36
Bra020334.1-P	Field mustard	cytosol	64.68	64.98
Bra018190.1-P	Field mustard	cytosol	64.22	64.52
Bra015578.1-P	Field mustard	cytosol	62.39	62.96
Bra001439.1-P	Field mustard	cytosol	60.55	59.73
Bra038701.1-P	Field mustard	cytosol	60.09	59.01
Bra037516.1-P	Field mustard	cytosol	60.09	58.74
Bra009040.1-P	Field mustard	cytosol	59.63	58.3
GSMUA_Achr7P10970_001	Banana	cytosol	64.68	55.73
Bra011818.1-P	Field mustard	cytosol	56.88	55.61
Bra037810.1-P	Field mustard	cytosol	56.88	55.11
Bra031573.1-P	Field mustard	cytosol	61.47	52.34
Bra034771.1-P	Field mustard	cytosol	59.63	49.43
TraesCS3B01G272300.1	Wheat	cytosol	78.44	49.42
Bra033277.1-P	Field mustard	cytosol	53.21	48.95

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra030105	EnsemblPlants:Bra030105.1	EnsemblPlants:Bra030105.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4EMT5	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00025410B2	:	:

Description

AT1G28550 (E=7e-120) AtRABA1i | AtRABA1i (Arabidopsis Rab GTPase homolog A1i); GTP binding

Coordinates

chrA07:+:6534870..6535603

Molecular Weight (calculated)

24248.5 Da

IEP (calculated)

5.172

GRAVY (calculated)

-0.319

Length

218 amino acids

Sequence
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSN DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA LNVENAFTEV LTEIYRVVSK KALEAGDDPT TALPKGQTIN
201: VGGRDDISAV KKPGCCSA

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.