Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_04s0044g00070.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | VIT_04s0044g00070.t01 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G60860.1 | Thale cress | cytosol | 95.39 | 95.39 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 95.39 | 95.39 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 93.55 | 93.55 |
| HORVU5Hr1G056470.1 | Barley | cytosol, plasma membrane | 92.63 | 93.06 |
| TraesCS5A01G184100.1 | Wheat | golgi, plastid | 92.63 | 93.06 |
| KRH50137 | Soybean | cytosol, mitochondrion | 92.63 | 92.63 |
| OQU89311 | Sorghum | cytosol | 92.17 | 92.59 |
| Os09t0327100-01 | Rice | plasma membrane | 92.17 | 92.59 |
| TraesCS7D01G289000.1 | Wheat | cytosol | 92.17 | 92.59 |
| TraesCS7A01G285200.1 | Wheat | cytosol | 92.17 | 92.59 |
| TraesCS5B01G182200.1 | Wheat | cytosol | 91.71 | 92.13 |
| TraesCS5D01G188900.1 | Wheat | cytosol | 91.71 | 92.13 |
| TraesCS7B01G200600.1 | Wheat | cytosol | 91.71 | 92.13 |
| Os05t0564400-02 | Rice | plasma membrane | 91.71 | 91.71 |
| EES19950 | Sorghum | cytosol | 91.24 | 91.67 |
| KRH30863 | Soybean | cytosol | 91.24 | 91.24 |
| GSMUA_Achr3P15540_001 | Banana | cytosol | 90.32 | 90.74 |
| Zm00001d009572_P001 | Maize | cytosol, mitochondrion, plasma membrane | 90.32 | 90.74 |
| AT3G15060.1 | Thale cress | cytosol | 90.32 | 90.32 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 89.86 | 89.86 |
| TraesCS1A01G398400.1 | Wheat | cytosol | 89.4 | 89.81 |
| Zm00001d039016_P001 | Maize | cytosol, mitochondrion, plasma membrane | 88.94 | 89.35 |
| GSMUA_Achr8P27180_001 | Banana | cytosol | 88.94 | 89.35 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 88.94 | 89.35 |
| TraesCS1B01G426300.1 | Wheat | cytosol | 88.94 | 89.35 |
| Bra001581.1-P | Field mustard | cytosol | 89.4 | 88.99 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 88.48 | 88.89 |
| CDX82451 | Canola | cytosol | 88.94 | 88.53 |
| Bra032914.1-P | Field mustard | cytosol | 88.48 | 88.07 |
| CDY34094 | Canola | cytosol | 88.48 | 88.07 |
| CDY30818 | Canola | cytosol | 88.48 | 88.07 |
| GSMUA_Achr5P09130_001 | Banana | cytosol | 88.02 | 88.02 |
| Bra010860.1-P | Field mustard | cytosol | 87.1 | 87.91 |
| CDX90160 | Canola | cytosol | 87.1 | 87.91 |
| CDY15659 | Canola | cytosol | 88.02 | 87.61 |
| CDX75804 | Canola | cytosol | 88.02 | 87.61 |
| GSMUA_Achr1P11940_001 | Banana | cytosol | 87.1 | 87.5 |
| CDY35757 | Canola | cytosol | 87.56 | 87.16 |
| CDX94631 | Canola | cytosol | 87.56 | 87.16 |
| Bra030105.1-P | Field mustard | cytosol | 87.56 | 87.16 |
| AT1G28550.1 | Thale cress | cytosol | 87.1 | 86.7 |
| PGSC0003DMT400033395 | Potato | cytosol | 85.71 | 86.11 |
| AT2G33870.1 | Thale cress | cytosol | 86.18 | 85.78 |
| Solyc03g006270.2.1 | Tomato | cytosol | 85.25 | 85.65 |
| PGSC0003DMT400058784 | Potato | cytosol | 84.79 | 85.58 |
| GSMUA_Achr4P02760_001 | Banana | cytosol | 74.65 | 85.26 |
| GSMUA_Achr1P04780_001 | Banana | cytosol | 78.34 | 85.0 |
| Bra021589.1-P | Field mustard | cytosol | 85.25 | 84.86 |
| CDY20100 | Canola | cytosol | 85.25 | 84.86 |
| Solyc10g008840.2.1 | Tomato | cytosol | 83.87 | 84.65 |
| CDX79548 | Canola | cytosol | 76.5 | 84.26 |
| Bra022959.1-P | Field mustard | cytosol | 83.87 | 83.49 |
| AT4G18430.1 | Thale cress | cytosol | 82.49 | 82.49 |
| CDX76522 | Canola | cytosol | 81.57 | 81.57 |
| CDY55638 | Canola | cytosol | 81.57 | 81.57 |
| CDY01540 | Canola | cytosol | 81.57 | 81.57 |
| Bra012597.1-P | Field mustard | cytosol | 81.11 | 81.11 |
| Bra021009.1-P | Field mustard | cytosol | 81.11 | 81.11 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 71.43 | 80.73 |
| TraesCS3D01G244500.1 | Wheat | cytosol | 79.72 | 79.36 |
| TraesCS3A01G247000.1 | Wheat | cytosol | 79.72 | 79.36 |
| OQU87300 | Sorghum | cytosol | 77.42 | 76.71 |
| Zm00001d043935_P001 | Maize | cytosol | 77.42 | 76.36 |
| CDY60884 | Canola | cytosol | 75.58 | 73.54 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 71.43 | 72.09 |
| VIT_06s0004g05550.t01 | Wine grape | cytosol, extracellular | 70.05 | 70.05 |
| VIT_19s0014g01160.t01 | Wine grape | extracellular | 79.72 | 68.65 |
| VIT_13s0019g02470.t01 | Wine grape | cytosol | 69.12 | 62.24 |
| VIT_13s0064g01300.t01 | Wine grape | cytosol | 62.21 | 59.73 |
| VIT_08s0007g07800.t01 | Wine grape | cytosol | 60.83 | 59.19 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 68.2 | 58.5 |
| VIT_07s0191g00030.t01 | Wine grape | cytosol | 59.45 | 57.08 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 59.45 | 53.97 |
| TraesCS3B01G272300.1 | Wheat | cytosol | 79.72 | 50.0 |
Protein Annotations
| EntrezGene:100264083 | wikigene:100264083 | MapMan:22.8.1.1 | Gene3D:3.40.50.300 | ProteinID:CCB55643 | ProteinID:CCB55643.1 |
| UniProt:F6HM55 | EMBL:FN595992 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0016787 | EntrezGene:LOC100264083 | wikigene:LOC100264083 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF649 | SMART:SM00173 | SMART:SM00174 |
| SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 |
| UniParc:UPI00015CCAF1 | ArrayExpress:VIT_10s0003g00550 | EnsemblPlantsGene:VIT_10s0003g00550 | EnsemblPlants:VIT_10s0003g00550.t01 | unigene:Vvi.17949 | RefSeq:XP_002277579 |
| RefSeq:XP_002277579.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:1791815..1793891
Molecular Weight (calculated)
24264.7 Da
IEP (calculated)
5.799
GRAVY (calculated)
-0.268
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MASYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDSNIV IMLVGNKADL RHLRAVSTED AKAFAERENN FFMETSALES MNVENAFTEV LTQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GTKDDVSAVK KVGCCSA
101: FENVERWLKE LRDHTDSNIV IMLVGNKADL RHLRAVSTED AKAFAERENN FFMETSALES MNVENAFTEV LTQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GTKDDVSAVK KVGCCSA
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.