Factsheet for GSMUA_Achr7P14790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P03390_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	GSMUA_Achr6P03390_001	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02760_001	Banana	cytosol	72.4	73.16
TraesCS7D01G289000.1	Wheat	cytosol	81.77	72.69
TraesCS7A01G285200.1	Wheat	cytosol	81.77	72.69
KRH50137	Soybean	cytosol, mitochondrion	81.77	72.35
TraesCS7B01G200600.1	Wheat	cytosol	81.25	72.22
GSMUA_Achr1P04780_001	Banana	cytosol	74.48	71.5
VIT_10s0003g00550.t01	Wine grape	cytosol	80.73	71.43
KRH30863	Soybean	cytosol	80.73	71.43
Os05t0564400-02	Rice	plasma membrane	80.73	71.43
GSMUA_Achr4P02540_001	Banana	cytosol	71.35	71.35
OQU89311	Sorghum	cytosol	80.21	71.3
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	80.21	71.3
EES19950	Sorghum	cytosol	80.21	71.3
Os09t0327100-01	Rice	plasma membrane	80.21	71.3
TraesCS5A01G184100.1	Wheat	golgi, plastid	80.21	71.3
TraesCS5B01G182200.1	Wheat	cytosol	80.21	71.3
TraesCS5D01G188900.1	Wheat	cytosol	80.21	71.3
KRH20359	Soybean	cytosol, endoplasmic reticulum	80.21	70.97
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	79.17	70.37
VIT_19s0014g01820.t01	Wine grape	cytosol	79.17	70.05
AT5G60860.1	Thale cress	cytosol	79.17	70.05
PGSC0003DMT400024319	Potato	cytosol	78.65	69.59
Solyc07g053480.2.1	Tomato	cytosol, plastid	78.65	69.59
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	78.65	69.59
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	78.12	69.12
KRH25681	Soybean	cytosol	78.12	69.12
TraesCS1A01G398400.1	Wheat	cytosol	77.6	68.98
GSMUA_Achr1P11940_001	Banana	cytosol	77.6	68.98
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	77.6	68.98
KRH55839	Soybean	endoplasmic reticulum	77.6	68.66
PGSC0003DMT400020208	Potato	cytosol	77.6	68.66
TraesCS1D01G405900.1	Wheat	cytosol	77.08	68.52
TraesCS1B01G426300.1	Wheat	cytosol	77.08	68.52
GSMUA_Achr3P15540_001	Banana	cytosol	76.56	68.06
AT2G33870.1	Thale cress	cytosol	77.08	67.89
GSMUA_Achr6P31790_001	Banana	cytosol	58.33	67.47
Solyc12g014080.1.1	Tomato	cytosol	76.04	67.28
AT3G15060.1	Thale cress	cytosol	76.04	67.28
PGSC0003DMT400033395	Potato	cytosol	75.52	67.13
Bra032914.1-P	Field mustard	cytosol	76.04	66.97
CDX82451	Canola	cytosol	76.04	66.97
CDY34094	Canola	cytosol	76.04	66.97
CDY30818	Canola	cytosol	76.04	66.97
Bra001581.1-P	Field mustard	cytosol	76.04	66.97
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	75.52	66.82
VIT_12s0028g02650.t01	Wine grape	cytosol	75.0	66.67
Solyc03g006270.2.1	Tomato	cytosol	75.0	66.67
PGSC0003DMT400058784	Potato	cytosol	74.48	66.51
CDX90160	Canola	cytosol	74.48	66.51
Bra010860.1-P	Field mustard	cytosol	74.48	66.51
GSMUA_Achr8P27180_001	Banana	cytosol	74.48	66.2
CDY20100	Canola	cytosol	75.0	66.06
CDX94631	Canola	cytosol	75.0	66.06
CDY35757	Canola	cytosol	75.0	66.06
Bra021589.1-P	Field mustard	cytosol	75.0	66.06
CDX75804	Canola	cytosol	75.0	66.06
Bra030105.1-P	Field mustard	cytosol	75.0	66.06
CDX79548	Canola	cytosol	67.71	65.99
AT1G28550.1	Thale cress	cytosol	74.48	65.6
Bra022959.1-P	Field mustard	cytosol	74.48	65.6
CDY15659	Canola	cytosol	74.48	65.6
Solyc10g008840.2.1	Tomato	cytosol	73.44	65.58
GSMUA_Achr5P09130_001	Banana	cytosol	73.44	64.98
KRH27001	Soybean	cytosol, endoplasmic reticulum	73.44	64.68
TraesCS3A01G247000.1	Wheat	cytosol	73.44	64.68
TraesCS3D01G244500.1	Wheat	cytosol	73.44	64.68
AT4G18430.1	Thale cress	cytosol	71.88	63.59
KRH22324	Soybean	cytosol, endoplasmic reticulum	71.88	63.3
CDX76522	Canola	cytosol	70.83	62.67
CDY01540	Canola	cytosol	70.83	62.67
CDY55638	Canola	cytosol	70.83	62.67
Bra021009.1-P	Field mustard	cytosol	70.31	62.21
Bra012597.1-P	Field mustard	cytosol	70.31	62.21
OQU87300	Sorghum	cytosol	69.27	60.73
Zm00001d043935_P001	Maize	cytosol	69.27	60.45
GSMUA_Achr3P15680_001	Banana	plasma membrane	68.23	60.37
GSMUA_Achr9P05610_001	Banana	cytosol	66.67	59.53
GSMUA_Achr8P27780_001	Banana	cytosol	55.21	58.89
CDY60884	Canola	cytosol	65.62	56.5
GSMUA_Achr7P10970_001	Banana	cytosol	70.83	53.75
GSMUA_Achr2P05630_001	Banana	cytosol	59.38	53.02
GSMUA_Achr6P14930_001	Banana	cytosol	46.35	52.05
GSMUA_Achr6P28910_001	Banana	cytosol	58.33	51.61
GSMUA_Achr6P18430_001	Banana	cytosol	60.42	51.56
GSMUA_Achr9P03770_001	Banana	cytosol	49.48	50.8
GSMUA_Achr5P28770_001	Banana	cytosol	56.25	49.77
GSMUA_Achr7P26890_001	Banana	cytosol	47.92	49.2
GSMUA_Achr3P01690_001	Banana	cytosol	55.73	48.86
GSMUA_Achr8P18090_001	Banana	cytosol	54.69	48.17
GSMUA_Achr3P11810_001	Banana	cytosol	56.25	48.0
GSMUA_Achr3P21290_001	Banana	cytosol	54.17	47.49
GSMUA_Achr8P02230_001	Banana	plasma membrane	53.12	47.22
GSMUA_Achr1P19620_001	Banana	cytosol	55.73	46.32
GSMUA_Achr1P16540_001	Banana	cytosol	47.92	45.77
GSMUA_Achr3P13850_001	Banana	cytosol	52.08	42.73
GSMUA_Achr9P00860_001	Banana	cytosol	50.0	41.74
TraesCS3B01G272300.1	Wheat	cytosol	73.44	40.75

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr7G14790_001	EnsemblPlants:GSMUA_Achr7P14790_001	EnsemblPlants:GSMUA_Achr7T14790_001
UniProt:M0THL6	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029639DF	SEG:seg	:

Description

Ras-related protein Rab11B [Source:GMGC_GENE;Acc:GSMUA_Achr7G14790_001]

Coordinates

chr7:-:11878673..11880938

Molecular Weight (calculated)

21514.5 Da

IEP (calculated)

5.353

GRAVY (calculated)

-0.297

Length

192 amino acids

Sequence
(BLAST)

001: MAYKADEDYD YLFKVSKSTI GVEFATRTIR VDEKLVKAQI WDTAGQERYR AITSAYYRGA AGALVVYDVT RHITFENVER WMKELKNHTD ANTVMMLLGN
101: KADLRHIRAV SVEDAQAFAQ RERAFFMETS ALESMNVETA FTEVLTQIYH VVSKKVLDLG DDPSAVPKGQ TINIGADDDV QAAAKKTGCC AE

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.