Factsheet for PGSC0003DMT400039780

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g014080.1.1	Tomato	cytosol	99.54	99.54
PGSC0003DMT400024319	Potato	cytosol	90.32	90.32
TraesCS5A01G184100.1	Wheat	golgi, plastid	88.02	88.43
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	88.02	88.43
PGSC0003DMT400020208	Potato	cytosol	88.02	88.02
Os09t0327100-01	Rice	plasma membrane	87.56	87.96
OQU89311	Sorghum	cytosol	87.56	87.96
VIT_19s0014g01820.t01	Wine grape	cytosol	87.56	87.56
TraesCS5D01G188900.1	Wheat	cytosol	87.1	87.5
TraesCS5B01G182200.1	Wheat	cytosol	86.64	87.04
TraesCS7D01G289000.1	Wheat	cytosol	86.18	86.57
TraesCS7A01G285200.1	Wheat	cytosol	86.18	86.57
TraesCS7B01G200600.1	Wheat	cytosol	85.71	86.11
Os05t0564400-02	Rice	plasma membrane	85.71	85.71
EES19950	Sorghum	cytosol	84.79	85.19
TraesCS1A01G398400.1	Wheat	cytosol	84.33	84.72
GSMUA_Achr5P09130_001	Banana	cytosol	84.33	84.33
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	83.87	84.26
PGSC0003DMT400033395	Potato	cytosol	83.87	84.26
GSMUA_Achr3P15540_001	Banana	cytosol	83.87	84.26
GSMUA_Achr1P11940_001	Banana	cytosol	83.87	84.26
TraesCS1D01G405900.1	Wheat	cytosol	83.87	84.26
TraesCS1B01G426300.1	Wheat	cytosol	83.87	84.26
PGSC0003DMT400058784	Potato	cytosol	83.41	84.19
GSMUA_Achr8P27180_001	Banana	cytosol	83.41	83.8
GSMUA_Achr4P02760_001	Banana	cytosol	73.27	83.68
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	82.49	82.87
GSMUA_Achr1P04780_001	Banana	cytosol	74.19	80.5
PGSC0003DMT400073077	Potato	cytosol	78.8	78.8
TraesCS3D01G244500.1	Wheat	cytosol	76.96	76.61
TraesCS3A01G247000.1	Wheat	cytosol	76.96	76.61
GSMUA_Achr7P14790_001	Banana	cytosol	66.82	75.52
Zm00001d043935_P001	Maize	cytosol	75.12	74.09
OQU87300	Sorghum	cytosol	74.65	73.97
PGSC0003DMT400053686	Potato	cytosol	67.28	67.59
PGSC0003DMT400064102	Potato	cytosol	65.9	66.82
PGSC0003DMT400078200	Potato	cytosol	65.44	66.05
PGSC0003DMT400069776	Potato	cytosol	64.06	64.65
PGSC0003DMT400055848	Potato	cytosol	63.59	64.49
PGSC0003DMT400065028	Potato	cytosol	59.91	57.52
PGSC0003DMT400041813	Potato	cytosol	58.99	57.14
GSMUA_Achr7P10970_001	Banana	cytosol	66.36	56.92
PGSC0003DMT400021064	Potato	cytosol	58.99	56.64
PGSC0003DMT400033664	Potato	cytosol	58.06	56.25
PGSC0003DMT400045950	Potato	cytosol	65.44	55.69
PGSC0003DMT400060649	Potato	cytosol	56.68	55.41
PGSC0003DMT400000356	Potato	cytosol	56.22	50.62
TraesCS3B01G272300.1	Wheat	cytosol	76.96	48.27

Protein Annotations

EntrezGene:102580452	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1B8R8	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400015374	PGSC:PGSC0003DMG400015374	EnsemblPlants:PGSC0003DMT400039780	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002960A9B	RefSeq:XP_006358958.1

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400015374]

Coordinates

chr12:+:393202..396661

Molecular Weight (calculated)

24321.8 Da

IEP (calculated)

5.428

GRAVY (calculated)

-0.267

Length

217 amino acids

Sequence
(BLAST)

001: MAGGYRAEDD YDYLFKLVLI GDSGVGKSNL LSRFSRNEFN LESKSTIGVE FATRSIKVDD KIVKAQIWDT AGQERYRAIT SAYYRGAVGA LVVYDITRHV
101: TFENVERWLK ELRDHTDQNI VIMLVGNKAD LRHLRAVSTE DAKAFAERES TFYMETSALE SLNVENAFTE VLTEIYRVVC RKALEVGDDP TTLPKGQTIN
201: VGKDDVSAVK KVGCCSV

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.