Factsheet for TraesCS5A01G184100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579
plastid: 22160430
golgi: 23128297
golgi: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G185700.1
TraesCS3B01G215300.1
TraesCS3D01G189700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	TraesCS3A01G185700.1	AT3G06540.1	21798944
AT5G60860.1	TraesCS3B01G215300.1	AT3G06540.1	21798944
AT5G60860.1	TraesCS3D01G189700.1	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	100.0	100.0
TraesCS5D01G188900.1	Wheat	cytosol	99.07	99.07
TraesCS5B01G182200.1	Wheat	cytosol	98.61	98.61
OQU89311	Sorghum	cytosol	98.15	98.15
Os09t0327100-01	Rice	plasma membrane	98.15	98.15
TraesCS7A01G285200.1	Wheat	cytosol	96.76	96.76
TraesCS1A01G398400.1	Wheat	cytosol	93.52	93.52
VIT_10s0003g00550.t01	Wine grape	cytosol	93.06	92.63
Solyc07g053480.2.1	Tomato	cytosol, plastid	92.59	92.17
VIT_19s0014g01820.t01	Wine grape	cytosol	92.59	92.17
PGSC0003DMT400024319	Potato	cytosol	92.59	92.17
AT5G60860.1	Thale cress	cytosol	92.13	91.71
KRH20359	Soybean	cytosol, endoplasmic reticulum	91.67	91.24
PGSC0003DMT400020208	Potato	cytosol	91.2	90.78
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	90.74	90.32
KRH25681	Soybean	cytosol	90.28	89.86
KRH50137	Soybean	cytosol, mitochondrion	90.28	89.86
KRH30863	Soybean	cytosol	89.81	89.4
KRH55839	Soybean	endoplasmic reticulum	89.81	89.4
AT3G15060.1	Thale cress	cytosol	89.35	88.94
CDX82451	Canola	cytosol	89.35	88.53
CDX75804	Canola	cytosol	89.35	88.53
Solyc12g014080.1.1	Tomato	cytosol	88.89	88.48
CDY34094	Canola	cytosol	88.89	88.07
CDY30818	Canola	cytosol	88.89	88.07
Bra032914.1-P	Field mustard	cytosol	88.89	88.07
Bra001581.1-P	Field mustard	cytosol	88.89	88.07
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	88.43	88.02
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	88.43	88.02
CDX90160	Canola	cytosol	87.04	87.44
Bra010860.1-P	Field mustard	cytosol	87.04	87.44
CDY35757	Canola	cytosol	87.96	87.16
CDX94631	Canola	cytosol	87.96	87.16
Bra030105.1-P	Field mustard	cytosol	87.96	87.16
VIT_12s0028g02650.t01	Wine grape	cytosol	87.04	87.04
CDY15659	Canola	cytosol	87.5	86.7
AT1G28550.1	Thale cress	cytosol	87.5	86.7
AT2G33870.1	Thale cress	cytosol	86.11	85.32
CDX79548	Canola	cytosol	77.78	85.28
PGSC0003DMT400033395	Potato	cytosol	85.19	85.19
PGSC0003DMT400058784	Potato	cytosol	84.72	85.12
Solyc03g006270.2.1	Tomato	cytosol	84.72	84.72
Solyc10g008840.2.1	Tomato	cytosol	84.26	84.65
Bra021589.1-P	Field mustard	cytosol	85.19	84.4
CDY20100	Canola	cytosol	85.19	84.4
Bra022959.1-P	Field mustard	cytosol	84.72	83.94
TraesCS3A01G247000.1	Wheat	cytosol	82.87	82.11
TraesCS7A01G354400.1	Wheat	golgi	81.02	80.65
GSMUA_Achr7P14790_001	Banana	cytosol	71.3	80.21
AT4G18430.1	Thale cress	cytosol	80.56	80.18
CDY01540	Canola	cytosol	80.09	79.72
CDY55638	Canola	cytosol	80.09	79.72
KRH27001	Soybean	cytosol, endoplasmic reticulum	80.09	79.36
Bra012597.1-P	Field mustard	cytosol	79.63	79.26
CDX76522	Canola	cytosol	79.17	78.8
Bra021009.1-P	Field mustard	cytosol	78.7	78.34
KRH22324	Soybean	cytosol, endoplasmic reticulum	78.7	77.98
TraesCS3A01G289600.1	Wheat	cytosol	77.31	75.57
CDY60884	Canola	cytosol	74.07	71.75
TraesCS3A01G364100.1	Wheat	cytosol	66.67	66.67
TraesCS5A01G485100.1	Wheat	cytosol, golgi	65.74	66.05
TraesCS4A01G343500.1	Wheat	cytosol	68.06	65.33
TraesCS1A01G015400.1	Wheat	cytosol	67.13	65.02
TraesCS1A01G131500.2	Wheat	cytosol	59.72	59.72
GSMUA_Achr7P10970_001	Banana	cytosol	68.06	58.1
TraesCS5A01G176000.1	Wheat	cytosol	60.65	57.96
TraesCS5A01G315700.1	Wheat	cytosol	54.17	47.37

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF346	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS5A01G184100
EnsemblPlants:TraesCS5A01G184100.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr5A:-:383881081..383883157

Molecular Weight (calculated)

24031.4 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.238

Length

216 amino acids

Sequence
(BLAST)

001: MAYRAEDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIRVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLKEL RDHTDANIVI MLVGNKADLR HLRAVSVEDA KAFAERESTF FMETSALEAM NVENAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: GKDDVSAVKK AGCCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.