Factsheet for Solyc07g053480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024319	Potato	cytosol	100.0	100.0
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	92.63	92.63
KRH25681	Soybean	cytosol	92.63	92.63
TraesCS5A01G184100.1	Wheat	golgi, plastid	92.17	92.59
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	92.17	92.59
Os05t0564400-02	Rice	plasma membrane	92.17	92.17
KRH55839	Soybean	endoplasmic reticulum	92.17	92.17
Os09t0327100-01	Rice	plasma membrane	91.71	92.13
OQU89311	Sorghum	cytosol	91.71	92.13
TraesCS7D01G289000.1	Wheat	cytosol	91.71	92.13
TraesCS7A01G285200.1	Wheat	cytosol	91.71	92.13
TraesCS7B01G200600.1	Wheat	cytosol	91.24	91.67
TraesCS5D01G188900.1	Wheat	cytosol	91.24	91.67
TraesCS5B01G182200.1	Wheat	cytosol	90.78	91.2
Solyc12g014080.1.1	Tomato	cytosol	90.78	90.78
EES19950	Sorghum	cytosol	90.32	90.74
TraesCS1A01G398400.1	Wheat	cytosol	89.4	89.81
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	89.4	89.81
VIT_12s0028g02650.t01	Wine grape	cytosol	88.94	89.35
TraesCS1B01G426300.1	Wheat	cytosol	88.94	89.35
TraesCS1D01G405900.1	Wheat	cytosol	88.94	89.35
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	88.94	89.35
GSMUA_Achr5P09130_001	Banana	cytosol	88.94	88.94
GSMUA_Achr3P15540_001	Banana	cytosol	88.02	88.43
GSMUA_Achr8P27180_001	Banana	cytosol	87.1	87.5
GSMUA_Achr1P11940_001	Banana	cytosol	86.64	87.04
GSMUA_Achr1P04780_001	Banana	cytosol	78.8	85.5
Solyc10g008840.2.1	Tomato	cytosol	84.33	85.12
Solyc03g006270.2.1	Tomato	cytosol	83.87	84.26
GSMUA_Achr4P02760_001	Banana	cytosol	73.73	84.21
KRH27001	Soybean	cytosol, endoplasmic reticulum	81.57	81.19
Solyc02g072180.2.1	Tomato	cytosol	80.65	80.65
KRH22324	Soybean	cytosol, endoplasmic reticulum	80.65	80.28
GSMUA_Achr7P14790_001	Banana	cytosol	69.59	78.65
Solyc07g055290.2.1	Tomato	plastid	78.8	78.44
TraesCS3D01G244500.1	Wheat	cytosol	77.88	77.52
TraesCS3A01G247000.1	Wheat	cytosol	77.88	77.52
Zm00001d043935_P001	Maize	cytosol	75.58	74.55
OQU87300	Sorghum	cytosol	74.65	73.97
Solyc06g076450.2.1	Tomato	plastid	70.51	71.16
Solyc01g103380.2.1	Tomato	nucleus	70.05	71.03
Solyc06g005810.2.1	Tomato	cytosol, unclear	70.51	70.83
Solyc10g045550.1.1	Tomato	nucleus	68.2	68.84
Solyc05g052900.2.1	Tomato	cytosol	67.28	67.91
Solyc03g079900.2.1	Tomato	cytosol	66.36	66.98
Solyc01g086850.2.1	Tomato	cytosol	63.13	60.89
Solyc04g012180.2.1	Tomato	cytosol, unclear	60.83	59.46
Solyc11g010100.1.1	Tomato	cytosol	61.29	59.38
GSMUA_Achr7P10970_001	Banana	cytosol	68.66	58.89
Solyc10g079030.1.1	Tomato	plastid	60.37	57.96
Solyc03g064020.2.1	Tomato	cytosol	58.99	57.14
Solyc01g096220.2.1	Tomato	plastid	57.6	51.44
TraesCS3B01G272300.1	Wheat	cytosol	77.88	48.84

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	UniProt:K4CFP5	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc07g053480.2	EnsemblPlants:Solyc07g053480.2.1
TIGRFAMs:TIGR00231	UniParc:UPI000276BE33	:	:	:	:

Description

No Description!

Coordinates

chr7:+:61927834..61930515

Molecular Weight (calculated)

24093.4 Da

IEP (calculated)

5.738

GRAVY (calculated)

-0.254

Length

217 amino acids

Sequence
(BLAST)

001: MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFSRNEFSL ESKSTIGVEF ATRSIHVEDK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDSNIV IMLVGNKADL RHLRAVSTED AKAFAEKEST FFMETSALES MNVENAFTEV LTQIYRVVSK KALEAGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.