Skip to main content
crop-pal logo
Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400041813 Potato cytosol 99.11 99.11
Solyc04g012180.2.1 Tomato cytosol, unclear 91.96 92.79
VIT_07s0191g00030.t01 Wine grape cytosol 91.07 90.27
KRH31313 Soybean endoplasmic reticulum 87.95 88.34
KRG97554 Soybean cytosol, endoplasmic reticulum 86.16 86.55
GSMUA_Achr3P01690_001 Banana cytosol 82.59 84.47
Zm00001d014278_P001 Maize extracellular, plasma membrane 81.7 84.33
GSMUA_Achr8P18090_001 Banana cytosol 81.25 83.49
Os10t0377400-01 Rice cytosol 80.36 83.33
GSMUA_Achr3P21290_001 Banana cytosol 81.25 83.11
OQU91938 Sorghum cytosol 80.36 82.95
TraesCS1D01G136900.1 Wheat cytosol 79.91 82.87
TraesCS1B01G152100.1 Wheat cytosol 79.91 82.87
TraesCS1A01G131500.2 Wheat cytosol 79.91 82.87
Zm00001d048222_P001 Maize extracellular, plasma membrane 77.68 80.18
EER92725 Sorghum cytosol 77.68 80.18
Zm00001d028002_P001 Maize mitochondrion 77.23 79.72
Solyc01g086850.2.1 Tomato cytosol 73.66 73.33
Solyc03g064020.2.1 Tomato cytosol 68.3 68.3
Solyc10g079030.1.1 Tomato plastid 68.3 67.7
HORVU1Hr1G034400.4 Barley plasma membrane 78.12 64.1
Solyc05g052900.2.1 Tomato cytosol 61.16 63.72
CDX69367 Canola cytosol 52.23 63.59
Solyc03g079900.2.1 Tomato cytosol 60.71 63.26
Solyc01g103380.2.1 Tomato nucleus 59.82 62.62
Solyc06g005810.2.1 Tomato cytosol, unclear 59.82 62.04
Solyc06g076450.2.1 Tomato plastid 58.93 61.4
Solyc07g053480.2.1 Tomato cytosol, plastid 59.38 61.29
Solyc01g096220.2.1 Tomato plastid 66.07 60.91
Solyc10g045550.1.1 Tomato nucleus 57.59 60.0
Solyc02g072180.2.1 Tomato cytosol 58.04 59.91
Solyc10g008840.2.1 Tomato cytosol 57.14 59.53
Solyc07g055290.2.1 Tomato plastid 57.59 59.17
Solyc12g010790.1.1 Tomato cytosol, nucleus, unclear 57.14 58.99
Solyc12g014080.1.1 Tomato cytosol 56.7 58.53
Solyc03g006270.2.1 Tomato cytosol 55.8 57.87
Protein Annotations
MapMan:22.8.1.1Gene3D:3.40.50.300GO:GO:0000166GO:GO:0003674GO:GO:0003824GO:GO:0003924
GO:GO:0005488GO:GO:0005525GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005768GO:GO:0005794GO:GO:0016787UniProt:K4D5H1InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF647SMART:SM00173SMART:SM00174
SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_domInterPro:Small_GTPase
EnsemblPlantsGene:Solyc11g010100.1EnsemblPlants:Solyc11g010100.1.1TIGRFAMs:TIGR00231UniParc:UPI00027694D9::
Description
No Description!
Coordinates
chr11:+:3222459..3224358
Molecular Weight (calculated)
24574.3 Da
IEP (calculated)
6.793
GRAVY (calculated)
-0.199
Length
224 amino acids
Sequence
(BLAST)
001: MASGGGYGDA SQKIDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERYR AVTSAYYRGA VGALLVYDIT
101: KRQTFDHIPR WLEELRAHAD KNIVIMLIGN KTDLEDQRAV PTEDAKEFAQ KEGLFFLETS AMEATNIEDA FLTVLTEIFN IVNKKNLAAG DDQANGNPAS
201: LTGKKILVPG PAQVIPEKKA CCSS
Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)
001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS
Arabidopsis Description
RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.